Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 3.0e-176 621.7 305 100.0
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.1e-149 533.5 308 82.1
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 3.1e-149 531.9 308 82.1
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 6.5e-147 524.2 308 79.5
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 1.4e-146 523.1 305 79.0
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 3.2e-146 521.9 305 80.0
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 3.6e-145 518.5 305 78.7
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.0e-143 512.7 302 79.8
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 4.4e-143 511.5 309 76.7
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 4.4e-143 511.5 302 78.8
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 9.7e-143 510.4 301 78.7
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 1.3e-142 510.0 304 78.0
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 2.2e-142 509.2 308 76.9
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 2.2e-142 509.2 305 77.7
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 2.2e-142 509.2 297 79.1
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 3.7e-142 508.4 302 78.5
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 4.8e-142 508.1 305 77.0
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 8.2e-142 507.3 305 77.7
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 1.1e-141 506.9 303 77.9
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 1.4e-141 506.5 308 76.0
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 1.8e-141 506.1 302 78.1
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 4.1e-141 505.0 307 76.5
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 4.1e-141 505.0 302 77.2
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 7.0e-141 504.2 302 77.5
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 9.1e-141 503.8 309 76.7
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 2.0e-140 502.7 302 75.8
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 4.5e-140 501.5 303 75.2
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 7.7e-140 500.7 298 77.5
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 1.0e-139 500.4 305 75.7
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 1.0e-139 500.4 302 75.8
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.3e-139 500.0 298 76.5
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 1.3e-139 500.0 303 76.2
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.7e-139 499.6 302 75.5
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 2.2e-139 499.2 303 76.2
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 2.9e-139 498.8 305 76.1
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 2.9e-139 498.8 303 76.2
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.9e-139 498.8 303 76.2
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.9e-139 498.8 302 75.8
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 6.5e-139 497.7 304 75.0
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 6.5e-139 497.7 305 76.4
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 4.2e-138 495.0 301 76.4
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 5.5e-138 494.6 303 74.6
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 5.5e-138 494.6 302 75.2
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 7.2e-138 494.2 304 75.7
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 7.2e-138 494.2 302 75.2
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 1.2e-137 493.4 302 76.5
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 2.7e-137 492.3 301 77.4
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 2.7e-137 492.3 302 76.2
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 6.1e-137 491.1 303 77.2
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 8.0e-137 490.7 304 75.3
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 4.0e-136 488.4 377 64.2
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 8.8e-136 487.3 302 75.2
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 8.8e-136 487.3 302 75.2
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 1.5e-135 486.5 303 73.6
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.5e-135 486.5 302 73.2
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.0e-135 486.1 302 75.2
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 4.4e-135 485.0 303 73.9
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 5.7e-135 484.6 303 73.3
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 7.5e-135 484.2 304 74.0
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 7.5e-135 484.2 373 64.6
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 1.7e-134 483.0 304 72.4
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 2.2e-134 482.6 307 73.9
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 2.2e-134 482.6 304 73.7
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.8e-134 482.3 304 73.7
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 4.8e-134 481.5 301 72.8
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 4.8e-134 481.5 305 74.4
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 4.8e-134 481.5 302 73.8
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.3e-134 481.1 302 74.2
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 1.1e-133 480.3 305 74.4
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.1e-133 480.3 301 74.1
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.4e-133 479.2 304 73.0
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 9.1e-133 477.2 301 74.8
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 4.5e-132 474.9 341 67.2
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.0e-131 473.8 305 71.8
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.3e-131 473.4 308 71.4
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 5.0e-131 471.5 301 72.1
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 6.5e-131 471.1 310 71.3
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 6.5e-131 471.1 306 72.2
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 5.5e-130 468.0 309 68.9
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 2.1e-129 466.1 314 70.1
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.0e-128 463.8 308 72.7
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.8e-128 463.0 309 68.3
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 5.2e-128 461.5 308 69.8
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 2.6e-127 459.1 308 68.5
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 2.6e-127 459.1 308 68.2
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 2.6e-127 459.1 314 68.5
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 3.4e-127 458.8 307 67.8
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 3.4e-127 458.8 309 68.0
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 7.5e-127 457.6 308 68.2
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.3e-126 456.8 307 67.4
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 2.2e-126 456.1 308 67.5
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 2.8e-126 455.7 309 67.6
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 3.7e-126 455.3 329 66.3
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.1e-125 453.8 310 67.4
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 2.4e-125 452.6 309 67.3
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 2.4e-125 452.6 309 67.0
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 1.6e-124 449.9 307 67.1
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.3e-123 446.8 307 66.8
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 8.5e-123 444.1 297 67.0
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.4e-120 436.8 297 67.3
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.2e-119 433.7 314 64.3
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 3.1e-117 425.6 305 67.9
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 3.6e-113 412.1 271 71.6
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 8.9e-112 407.5 303 66.0
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 5.7e-111 404.8 265 70.9
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.6e-108 396.7 255 70.2
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 4.7e-105 385.2 258 69.8
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 3.2e-101 372.5 302 60.3
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.1e-101 372.1 237 72.2
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 9.5e-98 360.9 301 53.8
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 6.4e-94 348.2 216 72.2
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 5.4e-93 345.1 201 78.6
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 6.0e-92 341.7 265 64.9
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 1.0e-91 340.9 291 56.4
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 1.5e-90 337.0 298 53.0
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.5e-90 336.3 302 56.0
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 3.2e-85 319.3 177 82.5
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 4.6e-84 315.5 177 81.9
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 2.9e-78 296.2 210 63.8
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 4.3e-74 282.3 179 76.5
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.3e-67 260.0 237 49.8
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 2.5e-66 256.5 181 68.0
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 1.7e-62 243.8 143 76.2
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.6e-55 219.9 184 55.4
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 9.7e-50 201.4 131 70.2
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 4.8e-49 199.1 170 54.1
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 6.9e-48 195.3 107 86.0
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 6.9e-48 195.3 126 72.2
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 8.5e-46 188.3 129 68.2
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-45 188.0 130 69.2
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 4.5e-39 166.0 105 72.4
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 2.5e-37 160.2 105 70.5
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 7.2e-37 158.7 118 66.9
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.2e-31 141.4 102 63.7
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.0e-30 138.3 102 64.7
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 2.5e-21 107.1 77 62.3
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.1e-16 91.7 52 75.0


User provided reference genes

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