Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.5e-184 649.4 343 100.0
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.5e-120 436.8 336 71.4
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 9.6e-115 417.5 356 68.0
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.8e-113 413.3 368 67.1
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.0e-112 409.8 348 66.7
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.0e-112 409.8 360 65.8
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.6e-112 409.5 386 63.0
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.6e-112 409.5 386 63.0
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.4e-112 409.1 386 62.7
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 3.4e-112 409.1 366 65.6
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.1e-110 404.1 374 63.9
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.2e-110 402.5 362 63.8
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.7e-109 399.4 362 64.6
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.9e-109 397.9 361 64.0
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 7.9e-109 397.9 371 62.8
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.3e-107 392.5 346 63.9
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 9.7e-107 391.0 376 62.0
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.3e-106 390.6 360 64.7
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.3e-106 390.6 351 64.1
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 2.8e-106 389.4 355 65.1
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 6.3e-106 388.3 377 63.7
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.1e-105 387.5 391 59.1
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.1e-105 386.0 336 65.8
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 5.3e-105 385.2 379 61.2
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 6.9e-105 384.8 417 57.3
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.5e-104 383.6 379 60.9
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.0e-104 383.3 419 56.3
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.0e-103 380.9 355 64.2
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 6.5e-103 378.3 416 55.8
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 3.2e-102 375.9 366 59.8
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 4.2e-102 375.6 375 60.5
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.2e-101 374.0 377 59.9
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.2e-101 374.0 377 59.9
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.6e-101 373.6 353 64.0
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.6e-101 373.6 360 60.8
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 3.6e-101 372.5 372 62.4
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 4.6e-101 372.1 369 61.5
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.0e-100 370.9 471 50.3
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 6.7e-100 368.2 351 61.5
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 8.8e-100 367.9 375 58.7
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.1e-99 367.5 320 65.3
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.0e-99 366.7 372 59.9
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 3.3e-99 365.9 364 61.3
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 2.8e-98 362.8 457 50.3
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 8.2e-98 361.3 390 58.5
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 2.4e-97 359.8 366 62.3
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 6.9e-97 358.2 357 61.6
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.5e-96 357.1 373 59.2
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.5e-96 357.1 400 55.8
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 2.0e-96 356.7 375 57.1
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 2.6e-96 356.3 498 47.2
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.4e-96 355.9 375 58.4
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 7.7e-96 354.8 371 60.1
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.0e-95 354.4 378 59.8
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.7e-95 353.6 374 57.8
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 2.9e-95 352.8 498 46.8
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.8e-95 352.4 289 67.8
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 8.5e-95 351.3 357 61.3
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 6.1e-93 345.1 427 52.9
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 6.7e-92 341.7 334 59.6
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.5e-91 340.5 397 52.9
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.5e-91 340.5 362 57.2
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 3.3e-91 339.3 332 62.0
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 2.2e-90 336.7 396 53.8
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 6.3e-90 335.1 338 59.8
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.4e-89 334.0 316 60.8
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 1.4e-89 334.0 387 53.7
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 4.1e-89 332.4 388 53.6
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.2e-88 330.9 370 56.5
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 1.5e-88 330.5 396 53.3
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 1.5e-88 330.5 401 51.9
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.0e-88 330.1 380 54.7
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 4.5e-88 328.9 369 56.4
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 5.9e-88 328.6 379 56.5
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.3e-87 327.4 365 54.5
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 5.5e-86 322.0 353 59.5
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.0e-84 317.8 375 54.9
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 2.3e-84 316.6 428 50.5
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.7e-82 310.5 355 57.5
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 6.3e-82 308.5 397 51.9
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 9.1e-81 304.7 426 49.8
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.9e-79 299.7 352 54.0
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 6.5e-79 298.5 459 46.2
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.9e-78 297.0 393 49.6
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 9.4e-78 294.7 378 51.1
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.2e-77 294.3 457 46.0
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 2.7e-77 293.1 454 46.0
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 1.8e-76 290.4 378 50.8
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.8e-76 290.4 318 56.9
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.8e-76 290.4 341 56.0
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 2.3e-76 290.0 371 50.7
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.2e-75 287.7 343 54.8
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.2e-75 287.7 425 47.3
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 5.7e-75 285.4 490 45.3
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 7.5e-75 285.0 488 45.3
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.7e-74 283.9 384 51.0
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 3.7e-74 282.7 450 45.3
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.8e-73 280.4 457 45.3
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.8e-73 280.4 368 51.9
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 2.4e-73 280.0 491 42.8
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 4.1e-73 279.3 461 44.5
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 1.6e-72 277.3 462 44.2
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 3.5e-72 276.2 456 45.2
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 3.5e-72 276.2 456 45.2
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 2.2e-71 273.5 429 42.4
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 5.5e-70 268.9 425 46.1
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 7.2e-70 268.5 316 50.0
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.1e-65 254.6 482 41.9
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 4.1e-65 252.7 333 51.4
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 7.0e-65 251.9 279 55.2
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 4.5e-64 249.2 345 48.4
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 5.9e-64 248.8 276 56.5
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 2.5e-62 243.4 442 39.8
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.0e-60 238.0 329 48.6
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.2e-58 230.3 388 44.6
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 9.2e-57 224.9 337 47.5
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.9e-54 217.2 381 40.9
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 3.3e-54 216.5 395 42.8
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 5.6e-54 215.7 313 49.5
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.3e-50 204.5 371 39.1
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.9e-50 203.4 317 45.7
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 7.0e-49 198.7 375 42.1
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 8.0e-45 185.3 382 44.5
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.4e-44 184.5 260 48.1
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.4e-44 184.5 359 42.1
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 2.6e-43 180.3 338 40.2
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 9.5e-38 161.8 369 38.2
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 4.0e-36 156.4 335 38.5
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 9.2e-33 145.2 145 58.6
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 8.4e-26 122.1 98 65.3
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 9.0e-20 102.1 216 37.5
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.3e-18 98.2 67 73.1
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.8e-18 96.7 82 64.6
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 3.8e-18 96.7 68 70.6
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 4.9e-18 96.3 68 69.1
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 8.4e-18 95.5 392 25.8
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.4e-17 94.7 69 68.1
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 7.9e-16 89.0 76 64.5
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.0e-15 88.6 96 53.1
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 1.1e-14 85.1 194 41.8
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.9e-14 84.3 66 65.2
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.6e-14 82.0 57 70.2
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 6.2e-13 79.3 98 48.0
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.1e-12 78.6 339 30.7
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.5e-11 74.7 99 47.5
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.5e-08 63.5 51 60.8
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 3.5e-08 63.5 51 60.8
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.5e-08 63.5 51 60.8
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.5e-08 63.5 51 60.8
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.5e-08 63.5 51 60.8
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 7.9e-08 62.4 51 58.8
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.0e-07 62.0 51 58.8
Gohir.D05G046500 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.5e-06 58.2 51 56.9


User provided reference genes

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