Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 2.2e-114 415.6 203 100.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.5e-59 233.4 189 60.8
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.2e-58 229.6 189 59.8
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 2.9e-58 229.2 177 63.8
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.4e-57 226.9 172 65.7
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 2.4e-57 226.1 177 61.6
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.2e-57 225.7 197 56.9
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.2e-57 225.7 172 65.7
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.2e-57 225.7 172 65.7
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.2e-57 225.3 192 57.3
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 5.4e-57 224.9 171 64.9
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 2.7e-56 222.6 175 61.1
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.7e-56 222.6 180 66.1
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.5e-56 222.2 189 59.3
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 4.6e-56 221.9 186 58.6
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 6.0e-56 221.5 188 59.6
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 7.8e-56 221.1 176 63.1
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 3.9e-55 218.8 141 71.6
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 8.7e-55 217.6 177 59.9
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.1e-54 217.2 189 57.7
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.5e-54 216.9 179 60.3
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.5e-54 216.9 139 71.2
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.5e-54 216.9 195 56.4
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.5e-54 216.9 200 56.0
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 2.5e-54 216.1 188 56.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 3.3e-54 215.7 139 70.5
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.3e-54 215.7 168 64.9
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 4.3e-54 215.3 146 69.9
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.3e-54 215.3 168 65.5
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.3e-54 215.3 168 64.9
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 4.3e-54 215.3 139 71.9
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 5.6e-54 214.9 186 57.0
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 5.6e-54 214.9 142 69.7
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 5.6e-54 214.9 171 59.6
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.3e-53 213.8 184 58.7
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.3e-53 213.8 139 70.5
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.3e-53 213.8 179 59.2
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 2.1e-53 213.0 177 58.8
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.6e-53 212.2 169 60.4
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.6e-53 212.2 177 58.8
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.8e-53 211.8 198 55.1
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 6.2e-53 211.5 192 55.2
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 8.1e-53 211.1 163 61.3
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 8.1e-53 211.1 190 54.7
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 8.1e-53 211.1 176 60.8
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 8.1e-53 211.1 139 68.3
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-52 210.7 189 56.1
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.1e-52 210.7 186 57.0
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.4e-52 210.3 135 70.4
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.4e-52 210.3 190 56.3
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.4e-52 210.3 133 74.4
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.4e-52 210.3 187 55.1
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.8e-52 209.9 190 56.3
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.8e-52 209.9 177 57.6
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 2.4e-52 209.5 191 56.5
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.1e-52 209.1 190 54.2
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.1e-52 209.1 140 71.4
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 4.0e-52 208.8 139 68.3
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 4.0e-52 208.8 186 56.5
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.3e-52 208.4 202 53.5
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 5.3e-52 208.4 139 67.6
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 6.9e-52 208.0 176 58.5
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 9.0e-52 207.6 190 54.7
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 9.0e-52 207.6 184 54.9
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.2e-51 207.2 135 68.9
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-51 207.2 135 68.9
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 1.2e-51 207.2 142 68.3
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.5e-51 206.8 135 68.9
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 1.5e-51 206.8 184 54.9
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 2.0e-51 206.5 134 70.1
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 2.0e-51 206.5 131 71.8
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.0e-51 206.5 133 69.9
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 2.0e-51 206.5 190 54.7
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.6e-51 206.1 189 55.6
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.6e-51 206.1 193 54.9
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.6e-51 206.1 176 56.2
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 3.4e-51 205.7 135 68.1
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 3.4e-51 205.7 135 68.1
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 3.4e-51 205.7 135 68.1
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.4e-51 205.7 197 54.8
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.4e-51 205.7 143 65.0
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.4e-51 205.7 193 54.9
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.4e-51 205.7 188 57.4
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.4e-51 205.3 187 55.6
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.4e-51 205.3 193 54.9
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 4.4e-51 205.3 144 66.7
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 5.8e-51 204.9 135 68.1
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 5.8e-51 204.9 201 52.2
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 7.6e-51 204.5 175 58.3
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.3e-50 203.8 193 54.4
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.3e-50 203.8 179 56.4
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.7e-50 203.4 131 71.0
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.7e-50 203.4 165 59.4
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.2e-50 203.0 135 69.6
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.2e-50 203.0 135 69.6
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 2.2e-50 203.0 134 70.9
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.9e-50 202.6 193 51.3
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.8e-50 202.2 135 68.1
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.9e-50 201.8 179 55.9
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 6.4e-50 201.4 152 61.8
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 8.4e-50 201.1 192 55.7
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 8.4e-50 201.1 145 64.1
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.1e-49 200.7 136 67.6
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.4e-49 200.3 134 67.9
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.4e-49 200.3 138 67.4
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 2.4e-49 199.5 137 65.0
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 4.2e-49 198.7 197 53.8
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 4.2e-49 198.7 146 63.7
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 4.2e-49 198.7 134 67.2
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.2e-49 198.7 140 70.0
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 7.1e-49 198.0 160 61.2
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 7.1e-49 198.0 148 62.8
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 9.3e-49 197.6 174 56.3
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.2e-48 197.2 180 57.8
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.6e-48 196.8 157 59.2
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 2.1e-48 196.4 157 60.5
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 2.7e-48 196.1 149 61.7
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 6.0e-48 194.9 148 62.2
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 6.0e-48 194.9 147 63.3
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.0e-48 194.9 169 60.4
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.0e-47 194.1 163 58.9
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.7e-47 193.4 138 65.9
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 6.6e-47 191.4 162 58.6
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.5e-46 190.3 186 53.2
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 2.5e-46 189.5 185 54.1
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 2.5e-46 189.5 160 55.6
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 7.3e-46 188.0 174 55.7
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.3e-45 187.2 138 60.9
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.6e-45 186.8 131 64.1
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.8e-45 186.0 181 53.6
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 4.8e-45 185.3 138 68.1
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 6.2e-45 184.9 187 52.9
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 8.1e-45 184.5 209 48.3
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.8e-44 183.3 106 75.5
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.8e-44 183.3 181 53.0
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.8e-44 183.3 181 53.0
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 4.0e-44 182.2 181 52.5
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.9e-44 181.4 180 55.6
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 9.0e-44 181.0 170 53.5
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 3.4e-43 179.1 141 59.6
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 2.2e-42 176.4 175 50.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.9e-42 175.3 191 49.7
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.4e-41 172.9 185 48.1
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.5e-41 171.8 187 48.7
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 2.1e-40 169.9 175 50.3
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.5e-40 169.1 189 46.6
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 4.6e-40 168.7 175 49.1
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 6.0e-40 168.3 160 53.1
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.3e-39 167.2 182 47.8
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.3e-39 166.4 130 59.2
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.3e-39 166.4 192 46.4
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.4e-38 161.4 184 46.7
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 9.6e-38 161.0 123 58.5
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.3e-37 160.6 181 47.0
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 3.7e-37 159.1 184 45.7
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.7e-37 159.1 184 46.2
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 6.2e-37 158.3 139 59.0
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 6.2e-37 158.3 108 63.0
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.8e-36 156.8 139 55.4
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 4.0e-36 155.6 173 46.2
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.6e-35 152.9 105 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 4.5e-35 152.1 165 47.9
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 8.4e-34 147.9 138 56.5
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 3.5e-32 142.5 161 45.3
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 4.6e-32 142.1 197 44.2
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.3e-31 139.8 176 41.5
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.9e-30 136.7 76 77.6
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 4.3e-30 135.6 139 50.4
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.1e-29 133.3 129 51.2
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 6.3e-29 131.7 233 39.5
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 2.2e-26 123.2 144 46.5
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 2.2e-26 123.2 144 46.5
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.4e-25 120.6 83 67.5
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 3.0e-23 112.8 135 44.4
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 1.3e-21 107.5 58 77.6
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.4e-20 103.2 129 46.5
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.9e-17 93.6 49 77.6
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 9.4e-17 91.3 52 75.0


User provided reference genes

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