Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 6.1e-155 550.8 289 100.0
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 2.7e-94 349.4 278 67.6
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 6.0e-94 348.2 278 68.3
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.3e-92 342.4 282 67.0
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 3.3e-92 342.4 278 66.9
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 1.6e-91 340.1 281 68.0
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 2.8e-91 339.3 278 66.5
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 6.3e-91 338.2 279 68.1
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 8.2e-91 337.8 278 67.6
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 1.1e-90 337.4 286 66.8
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.4e-90 337.0 291 66.0
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.4e-89 332.4 276 68.5
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 4.5e-89 332.0 276 68.5
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 5.9e-89 331.6 278 68.0
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 7.7e-89 331.3 276 67.8
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.0e-88 330.9 277 68.2
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.3e-88 330.5 282 67.0
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 1.3e-88 330.5 276 64.9
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 1.7e-88 330.1 280 68.6
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 2.2e-88 329.7 280 65.4
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.9e-88 329.3 233 76.4
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 2.9e-88 329.3 284 62.3
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 2.9e-88 329.3 279 65.6
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 3.8e-88 328.9 278 65.1
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 5.0e-88 328.6 278 66.5
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 1.9e-87 326.6 275 66.9
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 1.9e-87 326.6 274 68.6
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 3.2e-87 325.9 277 64.3
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 4.2e-87 325.5 276 65.2
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 1.6e-86 323.6 282 65.6
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 2.1e-86 323.2 278 65.1
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 2.7e-86 322.8 280 66.1
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 2.7e-86 322.8 278 64.7
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 3.6e-86 322.4 283 65.4
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 3.6e-86 322.4 291 64.9
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 4.6e-86 322.0 277 64.6
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 6.1e-86 321.6 282 65.2
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 6.1e-86 321.6 280 67.1
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.0e-85 320.9 280 66.1
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 1.4e-85 320.5 226 74.8
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 1.8e-85 320.1 275 67.6
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 2.3e-85 319.7 277 65.7
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 2.3e-85 319.7 282 63.1
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 3.9e-85 318.9 271 69.0
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 6.7e-85 318.2 274 64.2
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.1e-84 317.4 281 67.3
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.1e-84 317.4 275 67.3
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 1.1e-84 317.4 279 63.8
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 2.0e-84 316.6 285 63.9
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.3e-84 315.8 275 66.9
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 4.3e-84 315.5 314 57.3
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 4.3e-84 315.5 274 67.9
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 7.4e-84 314.7 284 64.1
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 7.4e-84 314.7 277 66.8
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 9.7e-84 314.3 275 66.9
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 9.7e-84 314.3 281 60.5
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 9.7e-84 314.3 277 63.9
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 1.3e-83 313.9 288 62.5
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 3.7e-83 312.4 299 63.2
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 3.7e-83 312.4 276 65.2
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 8.2e-83 311.2 277 62.5
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 8.2e-83 311.2 284 63.4
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 1.1e-82 310.8 290 63.4
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 1.4e-82 310.5 280 62.9
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.4e-82 310.5 278 62.6
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 1.8e-82 310.1 299 62.5
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 2.4e-82 309.7 278 64.4
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 4.1e-82 308.9 276 64.9
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 5.3e-82 308.5 278 62.6
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 5.3e-82 308.5 296 61.1
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 6.9e-82 308.1 280 62.9
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 6.9e-82 308.1 282 63.1
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 9.1e-82 307.8 272 65.4
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.5e-81 307.0 278 64.0
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 1.5e-81 307.0 278 62.6
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 2.0e-81 306.6 274 63.5
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 2.0e-81 306.6 217 72.8
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 3.4e-81 305.8 277 62.8
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 5.9e-81 305.1 279 64.2
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 7.7e-81 304.7 278 64.4
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 7.7e-81 304.7 274 62.8
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.3e-80 303.9 278 63.7
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.3e-80 303.9 278 63.7
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.3e-80 303.9 275 62.5
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 2.2e-80 303.1 302 58.6
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 2.9e-80 302.8 204 76.5
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.4e-79 300.4 278 61.9
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 4.2e-79 298.9 279 63.8
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 7.2e-79 298.1 205 75.1
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 3.6e-78 295.8 277 63.5
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.0e-77 294.3 252 63.5
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 1.4e-77 293.9 276 61.2
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 3.9e-77 292.4 219 69.4
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 6.7e-77 291.6 204 75.5
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 8.8e-77 291.2 204 74.0
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 8.8e-77 291.2 273 59.0
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 4.4e-76 288.9 216 70.4
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 9.7e-76 287.7 279 58.8
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 1.7e-75 287.0 219 67.1
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 2.8e-75 286.2 204 76.0
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 4.8e-75 285.4 260 62.7
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 1.1e-74 284.3 274 59.9
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 1.4e-74 283.9 215 69.3
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 5.3e-74 282.0 233 65.2
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.5e-73 280.4 265 63.8
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 2.6e-73 279.6 274 58.4
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 5.9e-73 278.5 276 59.8
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 1.3e-72 277.3 274 58.4
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 2.2e-72 276.6 220 66.4
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 2.2e-72 276.6 275 57.8
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 2.9e-72 276.2 204 70.6
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 3.8e-72 275.8 216 64.4
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 5.0e-72 275.4 278 58.6
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 6.5e-72 275.0 272 57.4
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 3.2e-71 272.7 204 70.6
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 9.4e-71 271.2 283 56.9
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 4.7e-70 268.9 269 61.7
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 6.1e-70 268.5 252 61.5
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 8.0e-70 268.1 214 67.3
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 5.2e-69 265.4 275 56.4
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 5.2e-69 265.4 191 68.6
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 6.7e-69 265.0 275 56.4
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 6.7e-69 265.0 275 56.4
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 7.4e-68 261.5 214 65.0
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 7.4e-68 261.5 214 65.0
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 2.2e-67 260.0 209 67.0
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 2.2e-64 250.0 165 75.8
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 6.5e-64 248.4 233 59.7
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 7.2e-63 245.0 223 58.7
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 3.6e-62 242.7 128 99.2
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 4.4e-60 235.7 230 56.5
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 4.8e-59 232.3 182 67.6
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 1.2e-57 227.6 223 55.2
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 1.3e-56 224.2 219 56.2
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 2.2e-56 223.4 154 71.4
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 5.0e-56 222.2 216 54.6
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.6e-54 217.2 272 48.5
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 5.9e-49 198.7 224 48.7
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.8e-43 179.9 124 71.0
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 6.3e-43 178.7 219 47.5
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 5.4e-42 175.6 176 57.4
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.2e-41 174.5 158 62.7
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 3.5e-33 146.4 111 71.2
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.0e-33 145.6 107 75.7
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 2.5e-31 140.2 118 61.9
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 2.1e-25 120.6 135 55.6
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 1.7e-24 117.5 241 36.5
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.5e-23 114.4 151 47.7
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.4e-18 97.8 124 54.0
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 2.1e-17 94.0 235 33.6
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.4e-13 80.5 50 78.0
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 4.9e-11 72.8 178 36.0
Pp3c11_16200 Physcomitrium patens HOM05D000764 ORTHO05D002819 1.9e-07 60.8 212 25.9
Hund02536 Selenicereus undatus HOM05D000764 ORTHO05D002819 7.3e-07 58.9 192 26.0
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 1.3e-06 58.2 55 65.5
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 2.1e-06 57.4 193 24.9
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 3.6e-06 56.6 60 51.7
Dinv09272 Davidia involucrata HOM05D004634 ORTHO05D005502 4.8e-06 56.2 48 66.7
Sc10g0009640 Simmondsia chinensis HOM05D000764 ORTHO05D002819 4.8e-06 56.2 193 26.9


User provided reference genes

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