Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 8.9e-78 293.5 145 100.0
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 1.6e-74 282.7 145 95.2
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 5.8e-69 264.2 142 89.4
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 5.8e-69 264.2 141 89.4
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 5.8e-69 264.2 142 88.7
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 5.8e-69 264.2 141 89.4
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 7.5e-69 263.8 141 89.4
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 9.8e-69 263.5 141 89.4
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 1.3e-68 263.1 141 88.7
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 1.3e-68 263.1 141 88.7
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 1.3e-68 263.1 141 88.7
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 1.3e-68 263.1 142 88.0
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 1.3e-68 263.1 141 88.7
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 1.7e-68 262.7 141 87.9
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 2.2e-68 262.3 141 88.7
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 2.9e-68 261.9 141 87.9
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 2.9e-68 261.9 141 88.7
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 2.9e-68 261.9 141 87.9
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 3.7e-68 261.5 141 88.7
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 3.7e-68 261.5 143 87.4
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 3.7e-68 261.5 141 87.2
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 3.7e-68 261.5 142 87.3
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 3.7e-68 261.5 141 88.7
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 4.9e-68 261.2 138 89.9
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 4.9e-68 261.2 141 88.7
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 6.4e-68 260.8 142 87.3
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 6.4e-68 260.8 138 89.1
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 8.3e-68 260.4 141 88.7
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 8.3e-68 260.4 141 87.2
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 8.3e-68 260.4 141 87.2
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 8.3e-68 260.4 143 86.7
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 8.3e-68 260.4 141 87.9
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.1e-67 260.0 142 87.3
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.1e-67 260.0 142 86.6
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.1e-67 260.0 142 86.6
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 1.1e-67 260.0 142 86.6
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 1.4e-67 259.6 142 86.6
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.4e-67 259.6 141 85.8
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 1.4e-67 259.6 138 88.4
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.9e-67 259.2 141 87.9
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 1.9e-67 259.2 143 86.0
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 1.9e-67 259.2 141 86.5
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 2.4e-67 258.8 138 89.9
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 2.4e-67 258.8 141 88.7
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.4e-67 258.8 142 85.9
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 2.4e-67 258.8 141 87.9
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 2.4e-67 258.8 141 86.5
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 3.2e-67 258.5 141 87.9
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 3.2e-67 258.5 138 88.4
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 3.2e-67 258.5 142 86.6
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 5.4e-67 257.7 142 85.9
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 5.4e-67 257.7 141 86.5
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 5.4e-67 257.7 141 87.9
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 7.0e-67 257.3 141 87.2
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 7.0e-67 257.3 141 86.5
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 7.0e-67 257.3 141 86.5
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 7.0e-67 257.3 141 86.5
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 7.0e-67 257.3 141 86.5
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 7.0e-67 257.3 140 87.9
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 9.2e-67 256.9 138 87.7
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 9.2e-67 256.9 142 85.9
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 1.2e-66 256.5 141 85.8
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.2e-66 256.5 141 86.5
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 1.2e-66 256.5 141 86.5
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 1.2e-66 256.5 141 86.5
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.2e-66 256.5 141 86.5
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.6e-66 256.1 138 88.4
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 4.6e-66 254.6 143 84.6
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 4.6e-66 254.6 137 87.6
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 4.6e-66 254.6 141 85.1
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 7.8e-66 253.8 141 85.8
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.0e-65 253.4 141 85.8
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 1.7e-65 252.7 141 85.1
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 3.0e-65 251.9 142 81.7
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 8.6e-65 250.4 138 86.2
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 8.6e-65 250.4 138 86.2
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 1.1e-64 250.0 130 89.2
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 1.1e-64 250.0 142 81.7
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 1.2e-63 246.5 138 85.5
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 1.2e-63 246.5 138 84.8
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 1.2e-63 246.5 138 84.8
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 2.8e-63 245.4 138 84.8
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.8e-63 245.4 139 83.5
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 3.6e-63 245.0 138 84.8
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 3.6e-63 245.0 138 84.8
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 6.2e-63 244.2 137 85.4
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 8.1e-63 243.8 138 84.8
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.1e-62 243.4 139 81.3
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.4e-62 243.0 137 84.7
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.4e-62 243.0 137 85.4
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.1e-62 241.9 151 79.5
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 4.0e-62 241.5 166 72.3
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 8.9e-62 240.4 164 72.0
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.2e-61 240.0 137 83.2
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 2.0e-61 239.2 137 82.5
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 2.0e-61 239.2 137 82.5
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 2.0e-61 239.2 138 82.6
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 2.6e-61 238.8 141 80.9
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 4.4e-61 238.0 137 81.8
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 4.4e-61 238.0 137 81.8
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 2.2e-60 235.7 138 82.6
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 2.2e-60 235.7 138 82.6
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 2.2e-60 235.7 138 82.6
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 2.2e-60 235.7 138 82.6
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.1e-59 233.4 137 83.2
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 1.4e-59 233.0 199 61.8
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 3.2e-59 231.9 139 78.4
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 5.4e-59 231.1 166 70.5
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 6.0e-58 227.6 205 60.0
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.5e-56 223.0 155 71.6
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 1.6e-55 219.5 141 76.6
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 4.7e-55 218.0 138 72.5
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 6.2e-55 217.6 137 75.9
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.8e-54 216.1 138 76.1
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 2.1e-50 202.6 142 65.5
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 6.0e-50 201.1 119 78.2
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 1.9e-48 196.1 138 61.6
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.2e-47 193.4 112 82.1
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.2e-47 193.4 160 61.2
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 4.7e-47 191.4 135 63.0
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.8e-46 189.5 120 77.5
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 2.4e-46 189.1 99 88.9
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 8.4e-44 180.6 97 85.6
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 9.6e-40 167.2 117 70.9
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 1.1e-27 127.1 137 46.0
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 1.4e-27 126.7 71 87.3
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.1e-25 118.2 72 80.6
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 8.7e-25 117.5 140 47.1
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 4.3e-24 115.2 67 80.6
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.3e-23 113.6 72 76.4
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 2.5e-16 89.4 43 93.0
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 2.5e-11 72.8 160 30.0
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 4.2e-11 72.0 114 37.7
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 2.1e-10 69.7 49 65.3
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 7.9e-10 67.8 44 70.5
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 1.4e-06 57.0 36 66.7
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 4.1e-06 55.5 83 37.3
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 4.1e-06 55.5 130 26.9


User provided reference genes

Program Settings