Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 6.9e-311 1069.7 501 100.0
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 1.1e-215 753.4 511 69.1
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.3e-213 746.5 438 76.0
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.9e-213 745.3 460 73.0
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 1.1e-212 743.4 455 74.3
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 9.5e-212 740.3 438 75.8
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 9.5e-212 740.3 500 70.0
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 2.1e-211 739.2 441 74.1
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 6.1e-211 737.6 511 66.1
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 8.0e-211 737.3 511 66.1
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.0e-210 736.9 492 70.3
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 1.8e-210 736.1 442 74.4
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.8e-210 736.1 506 68.2
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 4.0e-210 734.9 491 69.9
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 2.6e-209 732.3 475 70.5
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 2.6e-209 732.3 458 72.3
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 7.5e-209 730.7 438 75.1
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 2.2e-208 729.2 494 69.6
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 2.2e-208 729.2 438 74.7
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.7e-208 728.4 438 74.0
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 8.3e-208 727.2 438 74.0
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.1e-207 726.9 438 73.5
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 2.4e-207 725.7 486 68.5
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 4.1e-207 724.9 503 67.8
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.1e-207 724.9 492 69.5
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 7.0e-207 724.2 455 71.2
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.2e-206 723.4 438 73.1
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.2e-206 723.4 500 65.8
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.6e-206 723.0 485 67.8
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 2.7e-206 722.2 517 66.3
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.7e-206 722.2 476 67.2
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 3.5e-206 721.8 439 72.4
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 3.5e-206 721.8 438 72.8
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 4.6e-206 721.5 438 73.3
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 6.0e-206 721.1 500 68.6
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.0e-205 720.3 491 67.4
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 1.7e-205 719.5 450 72.0
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 2.3e-205 719.2 506 65.4
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.5e-204 716.5 469 68.9
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.9e-204 716.1 499 67.1
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 2.5e-204 715.7 487 68.8
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 2.5e-204 715.7 486 67.9
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 2.5e-204 715.7 469 68.4
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 3.3e-204 715.3 477 68.6
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 4.3e-204 714.9 505 67.5
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 7.3e-204 714.1 469 68.7
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 9.5e-204 713.8 496 67.3
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.6e-203 713.0 439 72.7
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 2.1e-203 712.6 503 65.2
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 2.1e-203 712.6 436 73.2
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.1e-203 712.6 513 65.5
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 2.8e-203 712.2 438 73.3
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 6.2e-203 711.1 436 73.6
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.1e-202 710.3 485 67.2
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.4e-202 709.9 436 72.9
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 6.8e-202 707.6 454 69.8
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.5e-201 706.4 523 63.5
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 9.8e-201 703.7 499 64.7
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.2e-200 702.6 438 71.5
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.9e-200 702.2 498 65.9
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 2.9e-200 702.2 439 70.8
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 3.7e-200 701.8 450 69.8
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 4.9e-200 701.4 484 66.7
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 1.1e-199 700.3 441 71.2
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.9e-199 699.5 502 64.1
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 7.0e-199 697.6 506 64.2
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 2.7e-198 695.7 470 67.2
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 7.8e-198 694.1 441 70.5
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-197 693.7 436 71.6
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.7e-197 693.0 468 67.1
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.7e-197 693.0 442 71.0
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 3.9e-197 691.8 465 67.1
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.9e-197 691.8 515 65.4
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 3.3e-196 688.7 493 64.7
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 3.3e-196 688.7 493 64.7
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.3e-196 688.7 416 72.8
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 4.3e-196 688.3 493 64.9
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 4.3e-196 688.3 450 67.6
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 5.6e-196 688.0 493 64.9
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 9.5e-196 687.2 488 64.5
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.7e-195 684.9 498 63.9
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 4.7e-195 684.9 482 65.1
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 6.2e-195 684.5 463 66.7
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 4.0e-194 681.8 490 65.3
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 6.8e-194 681.0 482 64.7
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.0e-193 679.5 491 67.0
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 2.6e-193 679.1 449 68.4
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 4.4e-193 678.3 436 69.5
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 6.4e-192 674.5 502 61.6
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.4e-191 673.3 436 70.6
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 5.1e-189 664.8 448 68.8
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 3.2e-183 645.6 527 58.6
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 7.1e-183 644.4 438 65.1
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.7e-181 639.8 444 62.6
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 9.6e-180 634.0 443 66.8
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 5.3e-178 628.2 437 67.0
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 9.9e-177 624.0 453 65.1
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.6e-174 616.7 379 72.8
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 2.1e-174 616.3 389 72.0
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.6e-171 606.7 391 70.3
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.6e-171 606.7 391 70.3
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 4.5e-169 598.6 362 74.0
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 3.5e-166 589.0 391 69.1
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 6.0e-166 588.2 517 55.7
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 8.7e-165 584.3 355 74.1
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.5e-164 583.6 472 58.9
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.2e-161 573.9 336 74.7
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.3e-160 570.5 419 63.2
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 7.1e-159 564.7 428 60.3
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 5.1e-157 558.5 463 55.7
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 8.2e-155 551.2 436 61.0
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 4.0e-154 548.9 444 56.3
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 9.3e-151 537.7 529 51.8
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.5e-150 535.8 454 54.8
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 1.1e-140 504.2 437 57.9
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 5.7e-140 501.9 332 67.2
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 1.4e-138 497.3 407 54.8
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 4.1e-130 469.2 281 74.7
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.0e-128 464.5 430 52.3
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.7e-115 419.5 262 70.6
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 2.8e-107 393.3 217 79.3
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.5e-95 354.4 465 38.5
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.5e-81 306.6 184 75.0
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 9.6e-71 271.9 163 73.6
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 7.1e-66 255.8 437 36.4
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.1e-61 241.9 148 71.6
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.7e-59 234.6 368 36.4
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.5e-52 211.5 121 76.0
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 1.7e-51 208.0 132 71.2
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.2e-50 203.4 128 70.3
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.4e-50 203.0 148 56.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.2e-43 181.0 118 69.5
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.5e-36 158.3 185 46.5
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.0e-35 155.6 146 51.4
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 8.4e-35 152.5 109 60.6
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 7.4e-31 139.4 191 42.9
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.4e-16 92.0 57 68.4
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 3.3e-15 87.4 60 56.7
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.7e-09 67.8 217 29.0
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.1e-07 62.4 41 61.0


User provided reference genes

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