Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003117 Daucus carota HOM05D000050 ORTHO05D007222 1.0e-69 266.5 127 100.0
arahy.Tifrunner.gnm1.ann1.96RWGK Arachis hypogaea HOM05D000050 ORTHO05D007222 2.2e-32 142.5 86 83.7
arahy.Tifrunner.gnm1.ann1.HFGD5J Arachis hypogaea HOM05D000050 ORTHO05D007222 2.2e-32 142.5 86 83.7
Thhalv10005728m.g Eutrema salsugineum HOM05D000050 ORTHO05D007222 3.8e-32 141.7 98 74.5
Nitab4.5_0000664g0280 Nicotiana tabacum HOM05D000050 ORTHO05D007222 3.8e-32 141.7 85 84.7
Nitab4.5_0001567g0110 Nicotiana tabacum HOM05D000050 ORTHO05D007222 3.8e-32 141.7 85 84.7
Actinidia14664 Actinidia chinensis HOM05D000744 ORTHO05D007222 4.9e-32 141.4 86 82.6
CAN.G309.86 Capsicum annuum HOM05D000050 ORTHO05D007222 4.9e-32 141.4 86 82.6
Ca_15611_v3 Cicer arietinum L. HOM05D000050 ORTHO05D007222 4.9e-32 141.4 86 82.6
Ciclev10009771m.g Citrus clementina HOM05D000050 ORTHO05D007222 4.9e-32 141.4 86 82.6
Lj1g0000466 Lotus japonicus HOM05D000050 ORTHO05D007222 4.9e-32 141.4 86 82.6
Lj8C590G3 Lonicera japonica HOM05D000050 ORTHO05D007222 6.4e-32 141.0 86 82.6
PGSC0003DMG402018585 Solanum tuberosum HOM05D000050 ORTHO05D007222 6.4e-32 141.0 86 81.4
Cc08_g09140 Coffea canephora HOM05D000050 ORTHO05D007222 8.4e-32 140.6 86 82.6
SalBow1G4375 Salvia bowleyana HOM05D000050 ORTHO05D007222 8.4e-32 140.6 86 82.6
Atru.chr7.2144 Acer truncatum HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 81.4
COL.COLO4_18681 Corchorus olitorius HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 81.4
Duzib168G0597 Durio zibethinus HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 81.4
Gohir.A06G094500 Gossypium hirsutum HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 81.4
Gohir.A07G023200 Gossypium hirsutum HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 81.4
Gohir.D07G026800 Gossypium hirsutum HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 81.4
Gorai.001G027800 Gossypium raimondii HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 81.4
Gorai.010G108600 Gossypium raimondii HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 81.4
HanXRQChr06g0181091 Helianthus annuus HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 82.6
Lsat_1_v5_gn_6_66261 Lactuca sativa HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 82.6
Oeu008294.2 Olea europaea HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 82.6
Thecc.09G041500 Theobroma cacao HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 81.4
GSVIVG01035654001 Vitis vinifera HOM05D000050 ORTHO05D007222 1.1e-31 140.2 86 81.4
Haze_09966 Corylus avellana HOM05D000050 ORTHO05D007222 1.4e-31 139.8 86 82.6
Glyma.06G082900 Glycine max HOM05D000050 ORTHO05D007222 1.4e-31 139.8 86 81.4
Lj7C705G9 Lonicera japonica HOM05D000050 ORTHO05D007222 1.4e-31 139.8 105 69.5
Manes.16G071900 Manihot esculenta HOM05D000050 ORTHO05D007222 1.4e-31 139.8 86 81.4
Sc09g0009200 Simmondsia chinensis HOM05D000050 ORTHO05D007222 1.4e-31 139.8 86 80.2
CiPaw.12G043600 Carya illinoinensis HOM05D000050 ORTHO05D007222 1.9e-31 139.4 86 81.4
Medtr3g110110 Medicago truncatula HOM05D000050 ORTHO05D007222 1.9e-31 139.4 86 81.4
Psat5g023400 Pisum sativum HOM05D000050 ORTHO05D007222 1.9e-31 139.4 86 81.4
TPR.G1353 Trifolium pratense HOM05D000050 ORTHO05D007222 1.9e-31 139.4 86 81.4
unitig_37.g12112 Utricularia gibba HOM05D000050 ORTHO05D007222 1.9e-31 139.4 86 81.4
EL10Ac8g19868 Beta vulgaris HOM05D000050 ORTHO05D007222 2.4e-31 139.0 85 82.4
Cfa004426 Carpinus fangiana HOM05D000050 ORTHO05D007222 2.4e-31 139.0 86 81.4
MELO3C011153.2 Cucumis melo HOM05D000050 ORTHO05D007222 2.4e-31 139.0 86 81.4
CsaV3_2G031000 Cucumis sativus L. HOM05D000050 ORTHO05D007222 2.4e-31 139.0 86 81.4
ECA236G1275 Erigeron canadensis HOM05D005282 ORTHO05D002071 2.4e-31 139.0 86 81.4
FvH4_2g35960 Fragaria vesca HOM05D000050 ORTHO05D007222 2.4e-31 139.0 86 81.4
FAN27G0096 Fragaria x ananassa HOM05D000050 ORTHO05D007222 2.4e-31 139.0 86 81.4
Os02g0634800 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D007222 2.4e-31 139.0 86 80.2
Prupe.1G451200 Prunus persica HOM05D000050 ORTHO05D007222 2.4e-31 139.0 86 81.4
Rhsim02G0180700 Rhododendron simsii HOM05D000050 ORTHO05D007222 2.4e-31 139.0 86 80.2
RcHm_v2.0_Chr6g0305911 Rosa chinensis HOM05D000050 ORTHO05D007222 2.4e-31 139.0 86 81.4
Ah.14g086900 Amaranthus hybridus HOM05D000054 ORTHO05D000171 3.2e-31 138.7 84 83.3
Dinv14240 Davidia involucrata HOM05D000050 ORTHO05D007222 3.2e-31 138.7 84 83.3
Migut.A00226 Erythranthe guttata HOM05D000050 ORTHO05D007222 3.2e-31 138.7 86 81.4
FAN15G1440 Fragaria x ananassa HOM05D000050 ORTHO05D007222 3.2e-31 138.7 86 80.2
Peaxi162Scf00276g00211 Petunia axillaris HOM05D000050 ORTHO05D007222 3.2e-31 138.7 84 83.3
QL12p029531 Quercus lobata HOM05D000050 ORTHO05D007222 3.2e-31 138.7 86 80.2
SalBow4G0289 Salvia bowleyana HOM05D000050 ORTHO05D007222 3.2e-31 138.7 84 83.3
Sed0027283 Sechium edule HOM05D000050 ORTHO05D007222 3.2e-31 138.7 86 81.4
vmacro00934 Vaccinium macrocarpon HOM05D000050 ORTHO05D007222 3.2e-31 138.7 84 83.3
Lalb_Chr08g0243201 Lupinus albus HOM05D000050 ORTHO05D007222 4.2e-31 138.3 86 81.4
Lalb_Chr23g0269531 Lupinus albus HOM05D000050 ORTHO05D007222 4.2e-31 138.3 86 81.4
HPP92_003931 Vanilla planifolia HOM05D000050 ORTHO05D007222 4.2e-31 138.3 86 80.2
Eucgr.E03515 Eucalyptus grandis HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 79.1
Eucgr.L00924 Eucalyptus grandis HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 79.1
MD08G1116800 Malus domestica HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 80.2
MD15G1096300 Malus domestica HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 80.2
Oeu019245.1 Olea europaea HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 81.4
PSO566G0002 Papaver somniferum HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 80.2
PSO782G1496 Papaver somniferum HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 80.2
Potri.006G240900 Populus trichocarpa HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 81.4
PGR004G1236 Punica granatum HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 79.1
Zm00001eb248190 Zea mays HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 79.1
Zm00001eb248200 Zea mays HOM05D000050 ORTHO05D007222 5.5e-31 137.9 86 79.1
MSTRG.11709 Avicennia marina HOM05D000050 ORTHO05D007222 1.2e-30 136.7 86 80.2
CSS0042090 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D007222 1.2e-30 136.7 86 80.2
Aqoxy7G01589 Aquilegia oxysepala HOM05D000050 ORTHO05D007222 1.6e-30 136.3 86 80.2
AT5G25760 Arabidopsis thaliana HOM05D000050 ORTHO05D007222 1.6e-30 136.3 86 79.1
CSS0002876 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D007222 1.6e-30 136.3 85 81.2
Glyma.04G081200 Glycine max HOM05D000050 ORTHO05D007222 2.1e-30 136.0 86 80.2
Sabra18G0039300 Salix brachista HOM05D000050 ORTHO05D007222 2.1e-30 136.0 86 79.1
Sed0005860 Sechium edule HOM05D000050 ORTHO05D007222 2.1e-30 136.0 86 80.2
Zm00001eb185530 Zea mays HOM05D000050 ORTHO05D007222 2.1e-30 136.0 86 77.9
ATR0804G083 Amborella trichopoda HOM05D000050 ORTHO05D007222 2.7e-30 135.6 86 77.9
AL3G45760 Arabidopsis lyrata HOM05D000050 ORTHO05D007222 2.7e-30 135.6 86 79.1
AL6G37630 Arabidopsis lyrata HOM05D000050 ORTHO05D007222 2.7e-30 135.6 86 79.1
Aa31LG8G1080 Aethionema arabicum HOM05D000050 ORTHO05D007222 3.5e-30 135.2 86 79.1
Potri.018G039200 Populus trichocarpa HOM05D000050 ORTHO05D007222 3.5e-30 135.2 86 77.9
TWI32G1013 Tripterygium wilfordii HOM05D000050 ORTHO05D007222 4.6e-30 134.8 86 77.9
TWI63G1051 Tripterygium wilfordii HOM05D000050 ORTHO05D007222 4.6e-30 134.8 86 77.9
TAR636G1716 Trochodendron aralioides HOM05D000050 ORTHO05D007222 4.6e-30 134.8 86 76.7
Cpa.g.sc78.68 Carica papaya HOM05D000050 ORTHO05D007222 6.0e-30 134.4 87 78.2
Nn2g11681 Nelumbo nucifera HOM05D000050 ORTHO05D007222 6.0e-30 134.4 86 79.1
AUR62036615 Chenopodium quinoa HOM05D000050 ORTHO05D007222 7.9e-30 134.0 84 79.8
AUR62039499 Chenopodium quinoa HOM05D000050 ORTHO05D007222 7.9e-30 134.0 84 79.8
SGA_v2.0_scaffold185G40039 Striga asiatica HOM05D000050 ORTHO05D007222 7.9e-30 134.0 83 80.7
BcaNung03927 Brassica carinata HOM05D000050 ORTHO05D007222 1.0e-29 133.7 86 77.9
BcaNung04842 Brassica carinata HOM05D000050 ORTHO05D007222 1.0e-29 133.7 86 77.9
A06p36370 Brassica napus HOM05D000050 ORTHO05D007222 1.0e-29 133.7 86 77.9
CANSAT11G0277 Cannabis sativa HOM05D000050 ORTHO05D007222 1.0e-29 133.7 86 76.7
CARHR187650 Cardamine hirsuta HOM05D000050 ORTHO05D007222 1.0e-29 133.7 86 77.9
Gohir.D06G094100 Gossypium hirsutum HOM05D000050 ORTHO05D007222 1.0e-29 133.7 86 79.1
Sp2g21860 Schrenkiella parvula HOM05D000050 ORTHO05D007222 1.0e-29 133.7 86 77.9
THA.LOC104815056 Tarenaya hassleriana HOM05D000050 ORTHO05D007222 1.0e-29 133.7 86 76.7
ATR0315G118 Amborella trichopoda HOM05D000050 ORTHO05D007222 1.3e-29 133.3 84 79.8
Phvul.009G107200 Phaseolus vulgaris HOM05D000050 ORTHO05D007222 1.3e-29 133.3 86 76.7
Carub.0006s2354 Capsella rubella HOM05D000050 ORTHO05D007222 1.8e-29 132.9 87 77.0
BcaC04g23587 Brassica carinata HOM05D000050 ORTHO05D007222 2.3e-29 132.5 86 76.7
BolC9t53594H Brassica oleracea HOM05D000050 ORTHO05D007222 2.3e-29 132.5 86 76.7
MBI01_g30747_MAGBIO Magnolia biondii HOM05D000050 ORTHO05D007222 2.3e-29 132.5 86 76.7
BcaB04g19769 Brassica carinata HOM05D000050 ORTHO05D007222 3.0e-29 132.1 86 76.7
C07p42140 Brassica napus HOM05D000050 ORTHO05D007222 5.1e-29 131.3 83 79.5
BolC7t44745H Brassica oleracea HOM05D000050 ORTHO05D007222 5.1e-29 131.3 83 79.5
BraA06t26559Z Brassica rapa HOM05D000050 ORTHO05D007222 5.1e-29 131.3 83 79.5
A09p06110 Brassica napus HOM05D000050 ORTHO05D007222 1.1e-28 130.2 83 78.3
C09p06730 Brassica napus HOM05D000050 ORTHO05D007222 1.1e-28 130.2 83 78.3
VMungo1309G1656 Vigna mungo HOM05D000050 ORTHO05D007222 5.6e-28 127.9 86 73.3
Nn3g18088 Nelumbo nucifera HOM05D000050 ORTHO05D007222 7.4e-28 127.5 86 73.3
BraA09t36252Z Brassica rapa HOM05D000050 ORTHO05D007222 2.8e-27 125.6 81 76.5
Manes.03G062150 Manihot esculenta HOM05D000050 ORTHO05D007222 2.6e-25 119.0 81 74.1
Mapoly0029s0150 Marchantia polymorpha HOM05D000050 ORTHO05D007222 7.6e-25 117.5 84 67.9
Pp3c26_5580 Physcomitrium patens HOM05D000050 ORTHO05D007222 3.8e-24 115.2 83 68.7
BcaC04g23589 Brassica carinata HOM05D000050 ORTHO05D007222 1.1e-23 113.6 82 72.0
DCAR_007708 Daucus carota HOM05D000050 ORTHO05D007222 4.6e-22 108.2 70 80.0
CDE05G1861 Ceratophyllum demersum HOM05D000050 ORTHO05D007222 1.0e-21 107.1 72 73.6
Lj8C599G3 Lonicera japonica HOM05D000050 ORTHO05D007222 1.3e-21 106.7 70 78.6
AagrBONN_evm.TU.Sc2ySwM_228.1659 Anthoceros agrestis HOM05D000050 ORTHO05D007222 5.1e-21 104.8 85 64.7
Sabra06G0188300 Salix brachista HOM05D000050 ORTHO05D007222 1.5e-20 103.2 70 75.7
Zm00001eb185480 Zea mays HOM05D000050 ORTHO05D007222 3.4e-17 92.0 67 67.2
Cre05.g240150 Chlamydomonas reinhardtii HOM05D000050 ORTHO05D007222 6.5e-16 87.8 86 48.8
Eucgr.L01100 Eucalyptus grandis HOM05D000050 ORTHO05D007222 3.0e-13 79.0 73 56.2
ATR0572G001 Amborella trichopoda HOM05D000050 ORTHO05D007222 1.9e-12 76.3 71 56.3
AL6G37590 Arabidopsis lyrata HOM05D000050 ORTHO05D007222 1.2e-09 67.0 34 85.3
PRCOL_00003018 Prasinoderma coloniale HOM05D000050 ORTHO05D007222 2.6e-09 65.9 85 40.0
CSS0027155 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D007222 4.5e-09 65.1 34 85.3
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.7e-08 63.2 33 81.8
vmacro11072 Vaccinium macrocarpon HOM05D000050 ORTHO05D007222 1.7e-08 63.2 42 64.3
Migut.D01847 Erythranthe guttata HOM05D000050 ORTHO05D000654 9.4e-07 57.4 84 33.3
BraA08t35121Z Brassica rapa HOM05D000050 ORTHO05D000654 2.1e-06 56.2 122 30.3
Cfa026168 Carpinus fangiana HOM05D000050 ORTHO05D123355 6.1e-06 54.7 122 25.4
ECA234G1634 Erigeron canadensis HOM05D000050 ORTHO05D000654 7.9e-06 54.3 84 33.3


User provided reference genes

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