Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 2.0e-308 1061.6 528 100.0
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 7.1e-133 478.4 491 54.2
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 9.2e-133 478.0 490 55.1
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 7.3e-130 468.4 489 54.2
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.8e-129 466.5 501 52.9
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 6.4e-126 455.3 497 52.3
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.9e-125 453.8 486 52.3
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 2.4e-125 453.4 467 54.6
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 7.1e-125 451.8 508 51.4
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 2.7e-124 449.9 497 53.1
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 4.6e-124 449.1 481 52.6
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 3.3e-122 443.0 505 49.1
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 7.3e-122 441.8 505 48.9
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.8e-121 439.9 500 50.0
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.8e-121 439.9 466 51.3
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.4e-120 437.6 495 51.1
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.8e-120 437.2 473 53.1
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.1e-120 436.4 498 51.2
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.2e-119 434.5 500 49.2
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 1.2e-119 434.5 521 49.3
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 1.5e-119 434.1 514 50.4
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 2.0e-119 433.7 503 51.1
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 4.5e-119 432.6 484 50.8
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.3e-118 431.0 506 49.8
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 2.2e-118 430.3 503 50.1
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.1e-117 427.9 503 49.1
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.1e-117 427.9 497 50.3
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 1.1e-117 427.9 504 49.4
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 5.4e-117 425.6 487 49.1
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.6e-116 424.1 499 49.9
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 2.1e-116 423.7 510 48.0
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 3.5e-116 422.9 504 48.4
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 3.5e-116 422.9 448 51.8
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 6.0e-116 422.2 506 48.6
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 6.0e-116 422.2 511 48.3
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 6.0e-116 422.2 500 49.6
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 2.3e-115 420.2 502 50.4
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.1e-115 419.1 506 48.6
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 8.7e-115 418.3 509 48.7
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 1.1e-114 417.9 506 48.2
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 1.1e-114 417.9 478 48.3
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 5.6e-114 415.6 502 49.0
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 7.4e-114 415.2 515 47.2
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 9.6e-114 414.8 506 48.0
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 9.6e-114 414.8 517 48.5
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.8e-112 410.6 515 47.0
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.8e-112 410.6 456 50.9
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.4e-112 410.2 501 49.5
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.4e-112 410.2 456 50.9
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 3.1e-112 409.8 505 49.1
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 5.3e-112 409.1 451 50.8
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 6.9e-112 408.7 494 48.0
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 3.4e-111 406.4 496 48.2
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.3e-110 404.4 509 47.9
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.3e-110 404.4 507 46.5
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.7e-110 404.1 504 46.4
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.9e-109 400.6 503 47.5
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 9.3e-109 398.3 481 50.5
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 9.3e-109 398.3 505 46.7
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.6e-108 397.5 511 46.4
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.6e-108 396.0 530 44.9
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 6.0e-108 395.6 489 46.4
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 7.9e-108 395.2 509 45.6
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.3e-107 394.4 499 47.1
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 3.9e-107 392.9 490 45.9
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 8.7e-107 391.7 502 45.2
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 8.7e-107 391.7 502 46.0
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.9e-106 390.6 502 45.0
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 1.9e-106 390.6 502 45.8
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 2.5e-106 390.2 504 45.8
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.5e-106 390.2 467 49.3
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 3.3e-106 389.8 500 46.0
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 5.6e-106 389.0 496 48.0
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 7.4e-106 388.7 503 45.3
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.3e-105 387.9 514 46.1
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.6e-105 387.5 509 45.2
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.1e-105 387.1 510 44.3
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 2.1e-105 387.1 503 45.9
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.8e-105 386.7 444 49.3
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 2.8e-105 386.7 523 42.3
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 8.2e-105 385.2 494 46.0
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.4e-104 384.4 493 46.2
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.4e-104 384.4 535 43.6
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 3.1e-104 383.3 494 45.7
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.0e-103 380.6 439 46.7
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 2.0e-103 380.6 498 45.2
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.0e-103 380.6 498 45.2
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 2.6e-103 380.2 499 47.1
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.6e-103 380.2 510 46.1
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 5.8e-103 379.0 448 48.0
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 4.2e-101 372.9 514 43.0
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.2e-101 372.9 505 44.6
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.2e-100 371.3 426 50.0
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 7.9e-100 368.6 503 44.7
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 2.3e-99 367.1 504 45.0
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 6.7e-99 365.5 439 49.2
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 8.7e-99 365.2 495 45.5
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.3e-98 362.8 498 45.4
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 7.4e-98 362.1 448 48.2
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.3e-97 361.3 498 45.4
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.4e-96 357.8 510 44.5
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 6.9e-96 355.5 461 48.4
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 2.6e-95 353.6 490 43.3
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 3.4e-95 353.2 481 42.0
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.3e-94 351.3 528 42.6
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 6.5e-94 349.0 453 46.6
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.1e-93 348.2 453 44.2
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.1e-93 348.2 539 41.9
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 1.9e-93 347.4 482 44.4
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.9e-93 347.4 480 44.2
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 3.6e-92 343.2 463 47.5
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.1e-88 331.6 497 41.9
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.3e-88 329.3 509 41.5
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 5.9e-87 325.9 507 40.0
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 2.2e-86 323.9 470 41.7
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 2.5e-85 320.5 523 39.2
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.2e-81 307.4 498 40.4
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 9.4e-77 292.0 503 36.8
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.2e-76 291.6 405 42.5
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.7e-73 281.2 507 36.7
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.9e-69 267.7 544 34.4
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.9e-69 267.7 544 34.4
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.2e-68 265.0 486 36.6
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 8.0e-68 262.3 463 37.6
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.8e-67 261.2 442 38.2
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.8e-67 259.2 537 33.3
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.0e-66 257.7 504 35.9
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.1e-61 241.9 268 51.1
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 1.1e-61 241.9 276 48.2
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 5.2e-59 233.0 501 32.7
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 4.0e-51 206.8 310 39.4
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 2.6e-50 204.1 454 32.8
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.6e-44 184.9 585 27.4
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.5e-42 178.3 123 67.5
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 2.0e-42 177.9 123 66.7
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.8e-42 176.4 573 27.4
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.3e-41 175.3 387 34.9
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 3.7e-41 173.7 661 26.3
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 1.3e-33 148.7 273 38.8
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 3.2e-32 144.1 152 46.7
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 8.6e-30 136.0 145 51.0
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 4.3e-29 133.7 110 61.8
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.5e-26 125.2 285 32.3
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.9e-24 118.2 94 62.8
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 5.6e-21 106.7 159 41.5
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.1e-20 104.8 155 41.3
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 3.6e-20 104.0 132 45.5
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 1.4e-19 102.1 145 44.8
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 4.4e-18 97.1 134 44.0
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 2.9e-17 94.4 99 49.5
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 4.6e-15 87.0 84 52.4
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 1.8e-11 75.1 146 29.5
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 7.6e-10 69.7 57 54.4
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 5.4e-08 63.5 150 31.3


User provided reference genes

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