Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 6.8e-140 500.7 271 100.0
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.0e-47 192.6 299 44.8
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 4.3e-41 172.6 301 42.9
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 4.0e-39 166.0 239 46.0
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 6.8e-39 165.2 300 40.0
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 8.9e-39 164.9 294 43.2
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 7.5e-38 161.8 298 42.3
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 6.4e-37 158.7 304 40.5
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 8.3e-37 158.3 299 41.1
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 3.5e-35 152.9 300 41.3
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 5.1e-34 149.1 285 40.0
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.1e-33 147.9 300 38.3
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 4.3e-33 146.0 302 38.1
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.2e-32 144.4 292 40.1
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.1e-31 141.4 302 39.1
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 5.2e-31 139.0 298 40.3
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 1.2e-30 137.9 298 37.9
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.2e-30 137.9 302 39.7
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 3.4e-30 136.3 306 38.9
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 9.9e-30 134.8 302 37.7
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 9.9e-30 134.8 271 34.3
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 2.2e-29 133.7 293 37.9
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.9e-29 133.3 272 38.6
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 3.7e-29 132.9 263 38.8
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 4.9e-29 132.5 271 35.1
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 1.1e-28 131.3 299 35.8
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 3.2e-28 129.8 266 38.7
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.2e-27 127.9 276 37.3
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.6e-27 127.5 304 35.9
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 2.1e-27 127.1 298 35.6
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 4.6e-27 125.9 325 32.6
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 6.0e-27 125.6 266 37.2
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 3.9e-26 122.9 297 35.4
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 8.6e-26 121.7 275 35.6
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 8.6e-26 121.7 276 35.5
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.1e-25 121.3 280 34.6
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 1.5e-25 120.9 268 38.8
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.5e-25 120.9 293 34.1
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.9e-25 120.6 290 34.5
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.9e-25 120.6 272 35.3
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 3.3e-25 119.8 296 34.5
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.6e-25 119.0 289 33.6
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.6e-24 117.5 275 35.3
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 2.1e-24 117.1 165 46.1
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 2.1e-24 117.1 271 38.7
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 2.8e-24 116.7 302 33.8
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 3.6e-24 116.3 297 36.0
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 3.6e-24 116.3 292 34.2
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.4e-23 114.4 272 36.4
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.8e-23 114.0 285 33.0
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 2.4e-23 113.6 268 35.1
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 2.0e-22 110.5 265 36.6
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 4.4e-22 109.4 295 33.6
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 9.9e-22 108.2 278 31.7
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 9.9e-22 108.2 270 32.6
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.3e-21 107.8 273 36.3
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 2.2e-21 107.1 279 37.3
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 2.9e-21 106.7 293 32.8
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 2.9e-21 106.7 302 33.1
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 3.8e-21 106.3 295 34.6
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 6.4e-21 105.5 289 33.6
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 8.4e-21 105.1 287 33.4
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 1.1e-20 104.8 265 34.7
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 3.2e-20 103.2 273 33.3
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 3.2e-20 103.2 275 36.0
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 5.4e-20 102.4 265 34.7
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 5.4e-20 102.4 281 31.7
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 9.2e-20 101.7 271 33.9
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 9.2e-20 101.7 275 36.4
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.2e-19 101.3 285 33.3
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 1.2e-19 101.3 280 30.0
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 1.2e-19 101.3 345 29.9
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 1.6e-19 100.9 269 32.7
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.6e-19 100.9 305 31.8
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 2.1e-19 100.5 277 35.4
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 2.1e-19 100.5 277 35.4
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 3.5e-19 99.8 284 36.3
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 3.5e-19 99.8 279 34.4
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 4.6e-19 99.4 293 33.8
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 6.0e-19 99.0 280 33.9
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 6.0e-19 99.0 285 31.6
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 6.0e-19 99.0 345 29.3
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 7.8e-19 98.6 274 30.3
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 1.0e-18 98.2 237 34.2
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 1.3e-18 97.8 282 30.1
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.7e-18 97.4 266 32.0
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.3e-18 97.1 262 32.4
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 3.0e-18 96.7 290 31.4
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 3.0e-18 96.7 274 33.6
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 5.1e-18 95.9 293 32.1
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 6.6e-18 95.5 283 31.4
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 6.6e-18 95.5 270 32.6
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 6.6e-18 95.5 309 29.4
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 1.1e-17 94.7 283 31.8
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 1.9e-17 94.0 279 31.2
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 2.5e-17 93.6 280 32.1
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 3.3e-17 93.2 330 30.0
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 3.3e-17 93.2 282 30.9
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 3.3e-17 93.2 286 31.5
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 4.3e-17 92.8 291 32.0
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 4.3e-17 92.8 269 31.6
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 4.3e-17 92.8 303 31.7
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 7.3e-17 92.0 292 32.2
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 1.6e-16 90.9 288 30.9
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.6e-16 90.9 270 30.4
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.6e-16 90.9 270 30.4
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 1.6e-16 90.9 296 34.1
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.6e-16 90.9 268 31.0
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.6e-16 90.9 271 32.5
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.8e-16 90.1 282 32.6
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 8.1e-16 88.6 310 31.3
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 5.3e-15 85.9 276 29.3
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 6.9e-15 85.5 167 34.1
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.6e-14 83.6 261 30.7
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 3.4e-14 83.2 271 29.5
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.4e-14 82.8 278 31.3
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 4.4e-14 82.8 193 33.7
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 5.8e-14 82.4 279 29.4
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 5.8e-14 82.4 296 31.1
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 9.9e-14 81.6 128 39.1
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.2e-13 80.5 275 29.1
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 2.2e-13 80.5 297 30.6
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.8e-13 79.7 298 28.2
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 4.9e-13 79.3 207 33.8
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 6.4e-13 79.0 299 28.1
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 6.4e-13 79.0 274 28.5
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 6.4e-13 79.0 287 31.7
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 8.4e-13 78.6 298 30.2
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 1.1e-12 78.2 265 31.3
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.4e-12 77.8 131 37.4
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.4e-12 77.8 298 30.5
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 1.4e-12 77.8 303 28.7
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 4.2e-12 76.3 110 46.4
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 7.1e-12 75.5 302 28.8
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.6e-11 74.3 271 31.0
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 2.1e-11 73.9 286 29.4
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 3.5e-11 73.2 193 30.6
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 3.5e-11 73.2 167 32.3
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 4.6e-11 72.8 269 32.7
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 6.0e-11 72.4 271 31.0
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 7.8e-11 72.0 225 32.9
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 1.0e-10 71.6 194 33.0
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 1.3e-10 71.2 182 31.9
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.3e-10 71.2 268 31.3
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.7e-10 70.9 270 32.6
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.7e-10 70.9 267 30.3
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.7e-10 70.9 316 27.8
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 3.0e-10 70.1 265 31.3
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 3.0e-10 70.1 296 28.0
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 3.0e-10 70.1 300 28.0
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 3.0e-10 70.1 280 31.4
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 3.0e-10 70.1 276 26.4
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 3.9e-10 69.7 283 30.7
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 3.9e-10 69.7 221 29.0
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 5.1e-10 69.3 262 29.8
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 6.6e-10 68.9 312 28.2
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 8.7e-10 68.6 294 26.5
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 8.7e-10 68.6 267 30.0
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.5e-09 67.8 265 26.0
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 3.3e-09 66.6 169 30.8
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 4.3e-09 66.2 297 27.3
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 4.3e-09 66.2 295 28.1
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 7.3e-09 65.5 265 30.2
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 9.6e-09 65.1 214 30.4
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 2.1e-08 63.9 271 28.0
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 4.8e-08 62.8 262 29.8
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 6.2e-08 62.4 268 28.4
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.1e-07 61.6 268 29.9
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 1.1e-07 61.6 265 27.2
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.1e-07 61.6 272 27.9
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 3.1e-07 60.1 174 31.6
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 4.0e-07 59.7 293 26.3
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.5e-06 57.8 268 29.5
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.5e-06 57.8 198 30.3
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 1.5e-06 57.8 272 26.8
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 2.6e-06 57.0 125 35.2
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.4e-06 56.6 219 27.9
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 5.8e-06 55.8 262 26.3


User provided reference genes

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