Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 6.9e-51 203.8 109 100.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 3.5e-34 148.3 97 79.4
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 3.5e-34 148.3 101 77.2
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.3e-33 146.4 107 73.8
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.3e-33 146.4 106 73.6
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.7e-33 146.0 102 75.5
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 1.7e-33 146.0 105 76.2
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.7e-33 146.0 106 72.6
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.7e-33 146.0 106 74.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.2e-33 145.6 101 75.2
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.2e-33 145.6 107 72.9
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.2e-33 145.6 107 72.9
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.9e-33 145.2 101 75.2
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 2.9e-33 145.2 106 74.5
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.9e-33 145.2 107 72.0
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.9e-33 145.2 107 72.0
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 5.0e-33 144.4 96 77.1
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 5.0e-33 144.4 107 72.0
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 1.1e-32 143.3 108 71.3
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.1e-32 143.3 101 74.3
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.1e-32 143.3 101 74.3
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.5e-32 142.9 106 67.9
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.5e-32 142.9 101 76.2
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.5e-32 142.9 101 76.2
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 1.5e-32 142.9 101 76.2
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.5e-32 142.9 109 71.6
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.5e-32 142.9 102 74.5
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 2.5e-32 142.1 102 74.5
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 2.5e-32 142.1 107 71.0
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.2e-32 141.7 96 75.0
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 3.2e-32 141.7 106 73.6
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.2e-32 141.4 96 76.0
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 5.5e-32 141.0 102 72.5
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 5.5e-32 141.0 106 72.6
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 5.5e-32 141.0 102 75.5
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 5.5e-32 141.0 102 72.5
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 7.2e-32 140.6 108 72.2
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 7.2e-32 140.6 101 73.3
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 7.2e-32 140.6 102 75.5
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 7.2e-32 140.6 109 71.6
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-31 139.8 106 72.6
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-31 139.8 106 71.7
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.6e-31 139.4 101 71.3
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.6e-31 139.4 106 70.8
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.6e-31 139.4 106 70.8
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.6e-31 139.4 106 70.8
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.6e-31 139.4 96 75.0
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.6e-31 139.4 102 71.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 2.1e-31 139.0 107 71.0
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.1e-31 139.0 101 68.3
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 2.7e-31 138.7 108 67.6
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.6e-31 138.3 106 69.8
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 3.6e-31 138.3 107 70.1
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 4.7e-31 137.9 89 79.8
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 4.7e-31 137.9 101 69.3
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 6.1e-31 137.5 101 73.3
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 8.0e-31 137.1 101 68.3
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-30 136.7 104 73.1
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-30 136.7 104 73.1
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.4e-30 136.3 102 70.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.8e-30 136.0 104 71.2
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.8e-30 136.0 101 70.3
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 2.3e-30 135.6 96 74.0
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.3e-30 135.6 106 68.9
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.3e-30 135.6 106 68.9
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.3e-30 135.6 106 69.8
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.3e-30 135.6 106 69.8
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 3.0e-30 135.2 106 67.9
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 3.0e-30 135.2 102 67.6
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 5.2e-30 134.4 108 70.4
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.2e-30 134.4 91 74.7
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 5.2e-30 134.4 106 70.8
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 6.8e-30 134.0 102 70.6
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 6.8e-30 134.0 97 72.2
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 6.8e-30 134.0 110 66.4
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 6.8e-30 134.0 102 70.6
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 8.8e-30 133.7 88 77.3
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 8.8e-30 133.7 106 67.0
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.2e-29 133.3 109 71.6
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.0e-29 132.5 101 66.3
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 2.6e-29 132.1 108 67.6
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 2.6e-29 132.1 108 67.6
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 3.4e-29 131.7 102 67.6
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 4.4e-29 131.3 107 68.2
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 5.7e-29 131.0 102 70.6
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 7.5e-29 130.6 106 66.0
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 9.8e-29 130.2 107 67.3
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 9.8e-29 130.2 101 70.3
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.3e-28 129.8 82 79.3
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.3e-28 129.8 106 67.0
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.7e-28 129.4 106 67.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.7e-28 129.4 97 69.1
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 2.8e-28 128.6 102 66.7
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 3.7e-28 128.3 106 67.0
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 3.7e-28 128.3 108 66.7
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 3.7e-28 128.3 106 66.0
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 6.3e-28 127.5 91 73.6
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 8.3e-28 127.1 102 64.7
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 8.3e-28 127.1 91 72.5
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.1e-27 126.7 112 66.1
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.1e-27 126.7 102 66.7
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.4e-27 125.6 86 75.6
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 9.1e-27 123.6 95 69.5
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.2e-26 123.2 94 64.9
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.2e-26 123.2 105 64.8
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.6e-26 122.9 86 72.1
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-26 122.5 105 64.8
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 4.5e-26 121.3 85 71.8
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-26 121.3 85 71.8
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-26 121.3 85 71.8
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-26 121.3 85 71.8
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-26 121.3 85 71.8
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 4.5e-26 121.3 85 71.8
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 5.9e-26 120.9 86 69.8
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.0e-25 120.2 105 63.8
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.3e-25 119.8 107 63.6
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.7e-25 119.4 102 64.7
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 3.8e-25 118.2 111 58.6
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.9e-24 115.9 100 64.0
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 4.2e-24 114.8 109 63.3
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.8e-22 109.4 107 59.8
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-22 108.6 89 67.4
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 5.7e-21 104.4 90 65.6
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 5.7e-21 104.4 90 65.6
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 5.7e-21 104.4 88 68.2
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.6e-18 96.3 88 58.0
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 6.6e-17 90.9 88 55.7
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.6e-15 86.3 90 53.3
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 5.2e-14 81.3 53 75.5
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 5.2e-14 81.3 55 74.5
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 3.4e-13 78.6 85 50.6
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 5.8e-13 77.8 54 70.4
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 9.8e-13 77.0 55 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 3.7e-12 75.1 88 50.0
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.2e-11 72.0 55 67.3
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 9.2e-11 70.5 103 47.6
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 2.0e-10 69.3 53 66.0
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 6.0e-10 67.8 70 58.6
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 6.0e-10 67.8 48 70.8
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 1.0e-09 67.0 48 68.8
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 2.3e-09 65.9 49 61.2
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 5.0e-09 64.7 83 53.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 1.9e-08 62.8 106 41.5
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.5e-08 62.4 60 56.7
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-08 62.0 71 50.7
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.2e-07 60.1 88 40.9
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 1.6e-07 59.7 63 58.7
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.6e-07 59.7 99 40.4
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.7e-07 58.2 58 55.2
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 8.0e-07 57.4 35 80.0
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 5.2e-06 54.7 42 64.3


User provided reference genes

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