Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002931 Daucus carota HOM05D007572 ORTHO05D009535 6.1e-38 160.2 75 100.0
Dinv12090 Davidia involucrata HOM05D007572 ORTHO05D009535 6.1e-22 107.1 73 69.9
Eucgr.K00578 Eucalyptus grandis HOM05D007572 ORTHO05D009535 3.9e-21 104.4 73 67.1
Manes.05G010100 Manihot esculenta HOM05D007572 ORTHO05D009535 5.2e-21 104.0 66 72.7
Potri.002G188300 Populus trichocarpa HOM05D007572 ORTHO05D009535 5.2e-21 104.0 72 66.7
MELO3C034050.2 Cucumis melo HOM05D007572 ORTHO05D009535 6.7e-21 103.6 70 70.0
TWI23G0551 Tripterygium wilfordii HOM05D007572 ORTHO05D009535 8.8e-21 103.2 72 66.7
Duzib138G0176 Durio zibethinus HOM05D007572 ORTHO05D009535 1.5e-20 102.4 70 65.7
CsaV3_5G029750 Cucumis sativus L. HOM05D007572 ORTHO05D009535 2.0e-20 102.1 70 68.6
Phvul.001G217100 Phaseolus vulgaris HOM05D007572 ORTHO05D009535 2.0e-20 102.1 74 64.9
Glyma.03G223300 Glycine max HOM05D007572 ORTHO05D009535 3.3e-20 101.3 72 68.1
Nn3g21914 Nelumbo nucifera HOM05D007572 ORTHO05D009535 3.3e-20 101.3 68 64.7
PGR142G3328 Punica granatum HOM05D007572 ORTHO05D009535 3.3e-20 101.3 72 66.7
CiPaw.08G083700 Carya illinoinensis HOM05D007572 ORTHO05D009535 4.4e-20 100.9 72 63.9
Medtr7g110410 Medicago truncatula HOM05D007572 ORTHO05D009535 4.4e-20 100.9 72 66.7
Gohir.A07G131300 Gossypium hirsutum HOM05D007572 ORTHO05D009535 9.7e-20 99.8 70 64.3
Sed0017651 Sechium edule HOM05D007572 ORTHO05D009535 1.7e-19 99.0 70 67.1
Lj1g0010997 Lotus japonicus HOM05D007572 ORTHO05D009535 2.2e-19 98.6 74 62.2
Oeu052583.1 Olea europaea HOM05D007572 ORTHO05D009535 2.2e-19 98.6 65 67.7
Thecc.01G323700 Theobroma cacao HOM05D000023 ORTHO05D000014 2.2e-19 98.6 69 65.2
Gohir.D07G135600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 2.8e-19 98.2 70 64.3
Sabra02G0167000 Salix brachista HOM05D007572 ORTHO05D009535 2.8e-19 98.2 64 70.3
TPR.G2442 Trifolium pratense HOM05D007572 ORTHO05D009535 2.8e-19 98.2 70 67.1
Sopen06g004090 Solanum pennellii HOM05D007572 ORTHO05D009535 3.7e-19 97.8 75 64.0
Psat3g018080 Pisum sativum HOM05D007572 ORTHO05D009535 4.8e-19 97.4 72 63.9
Lalb_Chr04g0260171 Lupinus albus HOM05D007572 ORTHO05D009535 6.3e-19 97.1 64 71.9
arahy.Tifrunner.gnm1.ann1.XSK3JW Arachis hypogaea HOM05D007572 ORTHO05D009535 1.1e-18 96.3 66 69.7
Gorai.001G147700 Gossypium raimondii HOM05D007572 ORTHO05D009535 1.8e-18 95.5 64 67.2
arahy.Tifrunner.gnm1.ann1.W6UB1T Arachis hypogaea HOM05D007572 ORTHO05D009535 2.4e-18 95.1 66 68.2
CAN.G1280.44 Capsicum annuum HOM05D007572 ORTHO05D009535 3.1e-18 94.7 75 61.3
Solyc06g009340.4 Solanum lycopersicum HOM05D007572 ORTHO05D009535 3.1e-18 94.7 75 62.7
Cfa004892 Carpinus fangiana HOM05D007572 ORTHO05D009535 4.1e-18 94.4 72 61.1
Lsat_1_v5_gn_8_167180 Lactuca sativa HOM05D007572 ORTHO05D009535 4.1e-18 94.4 73 63.0
vmacro16962 Vaccinium macrocarpon HOM05D007572 ORTHO05D009535 7.0e-18 93.6 70 65.7
VMungo1383G1880 Vigna mungo HOM05D007572 ORTHO05D009535 9.1e-18 93.2 82 57.3
HanXRQChr13g0414461 Helianthus annuus HOM05D007572 ORTHO05D009535 1.2e-17 92.8 64 70.3
Duzib133G1540 Durio zibethinus HOM05D007572 ORTHO05D009535 1.6e-17 92.4 64 65.6
Haze_05130 Corylus avellana HOM05D007572 ORTHO05D009535 2.6e-17 91.7 64 65.6
SalBow6G4072 Salvia bowleyana HOM05D007572 ORTHO05D009535 3.5e-17 91.3 65 67.7
AUR62011699 Chenopodium quinoa HOM05D007572 ORTHO05D009535 5.9e-17 90.5 64 64.1
Sp5g01190 Schrenkiella parvula HOM05D007572 ORTHO05D009535 5.9e-17 90.5 64 67.2
ATR0796G039 Amborella trichopoda HOM05D007572 ORTHO05D009535 1.3e-16 89.4 74 56.8
Aqoxy2G02521 Aquilegia oxysepala HOM05D007572 ORTHO05D009535 1.3e-16 89.4 74 56.8
BraA09t40838Z Brassica rapa HOM05D007572 ORTHO05D009535 1.7e-16 89.0 64 67.2
Sc05g0000110 Simmondsia chinensis HOM05D007572 ORTHO05D009535 1.7e-16 89.0 64 62.5
AL5G44940 Arabidopsis lyrata HOM05D007572 ORTHO05D009535 2.2e-16 88.6 64 65.6
COL.COLO4_23146 Corchorus olitorius HOM05D000023 ORTHO05D000014 2.2e-16 88.6 74 56.8
Thhalv10006305m.g Eutrema salsugineum HOM05D007572 ORTHO05D009535 2.9e-16 88.2 64 65.6
AT3G62190 Arabidopsis thaliana HOM05D007572 ORTHO05D009535 3.8e-16 87.8 64 65.6
GSVIVG01028266001 Vitis vinifera HOM05D007572 ORTHO05D009535 3.8e-16 87.8 64 62.5
C08p37130 Brassica napus HOM05D007572 ORTHO05D009535 5.0e-16 87.4 64 65.6
BolC8t51291H Brassica oleracea HOM05D007572 ORTHO05D009535 5.0e-16 87.4 64 65.6
Nitab4.5_0003324g0080 Nicotiana tabacum HOM05D007572 ORTHO05D009535 5.0e-16 87.4 82 56.1
Atru.chr5.887 Acer truncatum HOM05D007572 ORTHO05D009535 6.5e-16 87.0 54 72.2
Cc01_g21830 Coffea canephora HOM05D007572 ORTHO05D009535 6.5e-16 87.0 63 66.7
PSO210G6566 Papaver somniferum HOM05D007572 ORTHO05D009535 1.1e-15 86.3 70 55.7
Zm00001eb110000 Zea mays HOM05D007572 ORTHO05D009535 1.1e-15 86.3 70 58.6
Migut.D00021 Erythranthe guttata HOM05D007572 ORTHO05D009535 2.5e-15 85.1 72 61.1
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 3.2e-15 84.7 66 65.2
Hund11629 Selenicereus undatus HOM05D007572 ORTHO05D009535 5.5e-15 84.0 74 51.4
SGA_v2.0_scaffold80G25682 Striga asiatica HOM05D007572 ORTHO05D009535 9.4e-15 83.2 53 67.9
MBI18_g10389_MAGBIO Magnolia biondii HOM05D007572 ORTHO05D009535 1.2e-14 82.8 68 51.5
PSO761G0106 Papaver somniferum HOM05D007572 ORTHO05D009535 1.6e-14 82.4 73 53.4
unitig_60.g25647 Utricularia gibba HOM05D007572 ORTHO05D009535 4.7e-14 80.9 66 59.1
Carub.0005s2892 Capsella rubella HOM05D007572 ORTHO05D009535 8.0e-14 80.1 64 60.9
ClCG11G013240 Citrullus lanatus HOM05D007572 ORTHO05D009535 2.3e-13 78.6 55 67.3
Aa31LG10G16130 Aethionema arabicum HOM05D007572 ORTHO05D009535 5.2e-13 77.4 62 62.9
Ciclev10023453m.g Citrus clementina HOM05D007572 ORTHO05D009535 8.8e-13 76.6 53 66.0
Nitab4.5_0000363g0140 Nicotiana tabacum HOM05D007572 ORTHO05D009535 3.4e-12 74.7 54 63.0
CDE02G1692 Ceratophyllum demersum HOM05D007572 ORTHO05D009535 7.5e-12 73.6 71 54.9
CANSAT01G2141 Cannabis sativa HOM05D007572 ORTHO05D009535 1.3e-11 72.8 62 53.2
Os07g0637100 Oryza sativa ssp. japonica HOM05D007572 ORTHO05D009535 1.7e-11 72.4 54 59.3
TAR636G1955 Trochodendron aralioides HOM05D007572 ORTHO05D009535 2.4e-10 68.6 56 55.4
CBR_g88332 Chara braunii HOM05D007572 ORTHO05D009535 7.0e-10 67.0 62 48.4
Atru.chr5.884 Acer truncatum HOM05D007572 ORTHO05D009535 1.6e-09 65.9 42 69.0
Pp3c17_19540 Physcomitrium patens HOM05D007572 ORTHO05D009535 1.6e-09 65.9 74 48.6
PGSC0003DMG400007276 Solanum tuberosum HOM05D007572 ORTHO05D009535 4.5e-09 64.3 42 66.7
Ah.11g045850 Amaranthus hybridus HOM05D007572 ORTHO05D009535 1.7e-08 62.4 50 56.0
Rhsim01G0293200 Rhododendron simsii HOM05D007572 ORTHO05D009535 2.9e-08 61.6 48 60.4
A09p54260 Brassica napus HOM05D007572 ORTHO05D009535 4.2e-07 57.8 51 52.9
Glyma.19G220500 Glycine max HOM05D007572 ORTHO05D009535 9.4e-07 56.6 66 51.5
Gohir.A12G120600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 1.6e-06 55.8 55 52.7
Os01g0875700 Oryza sativa ssp. japonica HOM05D000175 ORTHO05D003429 3.6e-06 54.7 53 49.1
HPP92_002009 Vanilla planifolia HOM05D000175 ORTHO05D003429 8.0e-06 53.5 53 47.2


User provided reference genes

Program Settings