Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 7.6e-147 523.9 273 100.0
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 1.8e-92 343.2 239 74.5
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.0e-82 310.8 280 64.6
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.3e-82 310.5 245 67.3
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 2.3e-82 309.7 235 69.8
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 5.0e-82 308.5 271 62.4
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 5.0e-82 308.5 258 65.1
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 6.6e-82 308.1 275 61.5
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 4.2e-81 305.4 237 66.2
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 7.2e-81 304.7 248 65.3
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 9.5e-81 304.3 248 65.3
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 1.6e-80 303.5 274 62.8
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 2.1e-80 303.1 257 64.2
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 3.6e-80 302.4 248 64.9
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 8.0e-80 301.2 281 61.9
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.4e-79 300.4 263 62.7
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.8e-79 300.1 281 61.6
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 1.8e-79 300.1 262 64.1
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 4.0e-79 298.9 248 65.3
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.0e-79 298.9 248 65.3
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.0e-79 298.9 248 65.3
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 5.2e-79 298.5 256 64.1
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.2e-78 297.4 248 65.3
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 1.2e-78 297.4 246 65.0
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 1.2e-78 297.4 248 66.5
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 2.6e-78 296.2 262 63.7
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 2.6e-78 296.2 276 63.0
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 3.4e-78 295.8 248 64.5
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 3.4e-78 295.8 247 65.2
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.4e-78 295.4 248 64.9
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.4e-78 295.4 248 64.9
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 4.4e-78 295.4 305 57.0
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.3e-77 293.9 248 64.5
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 1.3e-77 293.9 248 64.9
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 1.1e-76 290.8 250 64.8
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.4e-76 290.4 248 64.5
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 2.4e-76 289.7 250 65.2
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 2.0e-75 286.6 245 63.3
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 3.5e-75 285.8 249 62.7
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 2.3e-74 283.1 249 62.2
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 2.9e-74 282.7 223 68.6
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 6.6e-74 281.6 255 61.6
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.9e-73 280.0 245 62.4
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 3.3e-73 279.3 267 59.9
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 3.3e-73 279.3 256 60.5
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 5.6e-73 278.5 249 62.2
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 1.6e-72 276.9 253 60.9
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 3.6e-72 275.8 247 63.6
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 3.6e-72 275.8 250 60.0
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 6.1e-72 275.0 240 62.5
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 8.0e-72 274.6 215 70.2
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 3.1e-71 272.7 265 58.1
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.0e-70 270.0 241 61.8
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 3.4e-70 269.2 239 61.9
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 4.4e-70 268.9 244 61.5
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 4.4e-70 268.9 216 65.3
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 1.7e-69 266.9 257 59.9
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 4.9e-69 265.4 248 60.9
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 7.0e-68 261.5 287 55.1
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 9.2e-68 261.2 265 55.5
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.2e-67 260.8 218 64.7
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 7.8e-67 258.1 280 55.7
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.3e-66 257.3 251 58.6
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 6.6e-66 255.0 218 63.3
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 3.3e-65 252.7 255 57.3
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 1.6e-64 250.4 275 53.8
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 8.0e-64 248.1 256 60.9
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 1.8e-63 246.9 222 62.2
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 6.8e-63 245.0 259 54.4
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 8.9e-63 244.6 256 56.2
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 1.2e-62 244.2 256 55.1
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 2.6e-62 243.0 222 61.7
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 7.5e-62 241.5 256 55.9
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 6.4e-61 238.4 242 56.6
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.4e-60 237.3 263 57.0
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 3.5e-59 232.6 217 59.4
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.3e-58 230.7 180 68.3
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.7e-58 230.3 279 52.0
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.9e-58 229.2 218 58.7
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 6.6e-58 228.4 201 63.2
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.6e-58 228.0 180 67.8
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.4e-55 220.7 258 52.7
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 8.9e-55 218.0 188 63.3
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.2e-54 217.6 212 57.1
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.5e-54 217.2 261 52.5
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 1.5e-54 217.2 178 70.8
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 2.0e-54 216.9 281 50.5
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 8.3e-53 211.5 196 60.7
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.4e-52 210.7 260 50.0
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.4e-52 210.7 263 50.6
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.4e-52 210.7 208 57.2
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.9e-52 210.3 255 52.5
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.7e-51 206.5 213 55.9
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.7e-51 206.5 186 60.2
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.7e-50 203.8 267 48.7
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 5.1e-50 202.2 244 52.0
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 6.6e-50 201.8 255 51.0
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 6.6e-50 201.8 255 51.0
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 2.1e-48 196.8 194 59.3
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.8e-48 196.4 205 56.6
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 2.8e-48 196.4 167 62.3
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 4.0e-47 192.6 254 50.0
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 4.0e-47 192.6 254 50.0
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 4.0e-47 192.6 254 50.0
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 9.9e-46 188.0 200 55.5
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 3.8e-45 186.0 253 47.0
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.9e-44 183.7 250 48.8
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 2.4e-44 183.3 201 56.2
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 7.1e-44 181.8 230 49.6
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 7.1e-44 181.8 189 57.1
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 4.6e-43 179.1 230 48.7
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 1.5e-41 174.1 226 47.3
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.9e-41 173.7 308 42.2
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 6.9e-39 165.2 221 51.6
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 2.9e-37 159.8 239 44.4
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 1.4e-36 157.5 268 41.0
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 2.8e-32 143.3 152 54.6
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 8.4e-29 131.7 196 43.4
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 1.1e-28 131.3 219 41.6
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 4.3e-25 119.4 126 57.9
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 6.2e-24 115.5 157 43.9
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 1.4e-23 114.4 205 41.0
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 1.2e-22 111.3 203 41.9
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 5.7e-17 92.4 146 43.2
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 4.1e-15 86.3 50 84.0
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 1.4e-12 77.8 57 68.4
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 7.1e-12 75.5 165 37.6
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.6e-11 74.3 51 66.7
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 2.3e-10 70.5 51 62.7
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.3e-09 66.2 184 33.2
CBR_g33995 Chara braunii HOM05D006128 ORTHO05D007466 1.2e-06 58.2 284 26.4
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 4.5e-06 56.2 51 54.9
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 1.0e-05 55.1 43 60.5


User provided reference genes

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