Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 0.0e+00 1078.9 585 100.0
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 1.4e-86 324.7 637 40.8
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.6e-85 321.2 618 39.8
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.6e-85 320.1 687 37.4
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 9.7e-83 312.0 649 37.9
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 2.8e-82 310.5 596 39.8
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.0e-80 304.3 651 37.2
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 2.6e-80 303.9 627 38.4
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 3.5e-80 303.5 633 37.6
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 4.5e-80 303.1 361 52.1
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 3.8e-79 300.1 659 36.9
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.9e-78 297.7 658 39.1
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 5.5e-78 296.2 617 38.1
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 1.6e-77 294.7 653 37.4
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 3.6e-77 293.5 621 37.5
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.7e-77 293.1 639 35.8
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 6.1e-77 292.7 665 36.4
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 1.8e-76 291.2 679 37.0
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 2.3e-76 290.8 644 38.2
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 4.0e-76 290.0 642 36.9
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.2e-75 288.5 640 38.0
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.2e-75 288.5 586 39.9
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.6e-75 287.3 606 37.3
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 9.7e-75 285.4 622 37.5
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.2e-74 284.3 635 35.4
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.8e-74 283.9 294 57.5
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.7e-74 283.5 561 39.6
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 6.3e-74 282.7 598 37.0
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-73 281.6 639 35.7
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.4e-73 281.6 577 38.6
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 1.8e-73 281.2 585 37.1
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.1e-73 280.4 633 36.3
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 3.1e-73 280.4 665 36.4
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 4.1e-73 280.0 686 37.3
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 5.3e-73 279.6 599 36.1
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 7.0e-73 279.3 644 36.3
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.0e-72 277.7 600 36.8
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.7e-72 275.8 620 36.8
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.0e-71 275.4 648 36.6
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 2.2e-71 274.2 695 34.7
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.9e-71 273.9 650 35.8
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.8e-71 273.5 589 37.9
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.0e-71 273.1 590 37.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 5.0e-71 273.1 632 35.9
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 6.5e-71 272.7 695 35.8
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 8.5e-71 272.3 635 35.9
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.5e-70 271.6 626 37.4
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 2.5e-70 270.8 621 37.0
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.5e-70 270.8 632 36.9
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 4.2e-70 270.0 582 37.5
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 4.2e-70 270.0 638 35.3
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 4.2e-70 270.0 620 36.3
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 5.5e-70 269.6 596 37.1
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 1.6e-69 268.1 610 36.2
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 3.6e-69 266.9 608 36.5
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 3.6e-69 266.9 670 34.9
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 6.1e-69 266.2 610 36.9
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.8e-68 264.6 590 38.3
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 3.0e-68 263.8 600 35.3
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.0e-68 263.8 637 37.0
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.0e-68 263.8 623 37.9
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 4.0e-68 263.5 645 35.3
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.2e-67 261.9 630 35.7
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 2.0e-67 261.2 627 35.1
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.4e-67 260.0 600 35.8
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.4e-67 260.0 627 34.8
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 5.7e-67 259.6 586 37.7
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 9.8e-67 258.8 624 36.2
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 9.8e-67 258.8 645 35.8
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 9.8e-67 258.8 304 52.3
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.3e-66 258.5 612 35.5
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.7e-66 258.1 600 37.0
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.7e-66 258.1 625 34.7
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.2e-66 257.7 653 34.6
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.8e-66 257.3 625 34.7
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 2.8e-66 257.3 608 35.5
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 6.3e-66 256.1 598 34.4
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 1.4e-65 255.0 636 34.0
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.8e-65 254.6 603 36.2
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.8e-65 254.6 605 35.0
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 2.4e-65 254.2 349 45.6
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 7.0e-65 252.7 584 35.1
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.2e-64 251.9 363 46.8
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.0e-64 251.1 620 35.5
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 2.0e-64 251.1 606 36.0
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 2.7e-64 250.8 286 53.1
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 3.5e-64 250.4 663 34.2
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.7e-63 248.1 580 34.7
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.9e-63 247.3 714 32.4
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 3.8e-63 246.9 604 35.3
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 5.0e-63 246.5 584 34.6
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.9e-62 244.6 632 34.5
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 2.5e-62 244.2 630 35.1
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 4.2e-62 243.4 601 34.1
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 1.2e-61 241.9 580 34.5
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.6e-61 241.5 598 33.6
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 2.1e-61 241.1 641 33.9
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 4.7e-61 240.0 329 47.1
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.0e-60 236.9 582 36.1
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 5.2e-60 236.5 707 33.2
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 8.9e-60 235.7 303 46.5
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 1.5e-59 235.0 598 34.1
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 4.4e-59 233.4 607 34.9
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 9.8e-59 232.3 610 34.8
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 7.0e-57 226.1 604 34.4
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.6e-56 224.9 649 31.6
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 1.7e-55 221.5 651 32.1
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 2.9e-55 220.7 278 46.8
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 3.9e-55 220.3 616 34.6
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.5e-54 218.4 297 47.5
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 1.5e-54 218.4 624 32.9
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.9e-54 218.0 648 32.9
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 7.3e-54 216.1 584 32.5
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.4e-52 211.8 293 45.4
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.4e-52 211.8 293 45.4
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 3.1e-52 210.7 592 33.8
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 6.8e-52 209.5 624 30.9
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 6.8e-52 209.5 627 32.7
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.5e-51 208.4 665 29.8
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 5.8e-51 206.5 587 32.9
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 9.8e-51 205.7 630 32.5
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.3e-50 205.3 513 33.7
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.9e-50 204.1 665 29.9
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 3.7e-50 203.8 594 32.3
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.9e-49 201.4 621 30.4
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 5.4e-49 199.9 588 32.3
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.7e-47 194.9 521 34.4
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.6e-45 188.3 569 31.1
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.2e-43 182.2 231 50.2
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 2.0e-43 181.4 231 49.8
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 2.4e-41 174.5 478 33.7
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 5.4e-41 173.3 311 38.3
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.0e-39 169.1 608 29.1
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 1.0e-39 169.1 638 29.9
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.3e-39 168.7 447 34.2
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.1e-38 165.6 257 39.7
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 3.6e-37 160.6 441 33.3
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.8e-36 158.3 221 38.9
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 5.2e-36 156.8 585 28.4
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.2e-35 155.6 295 35.3
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.4e-35 154.1 587 31.7
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 5.8e-35 153.3 417 34.1
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 9.9e-35 152.5 221 46.2
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 1.1e-30 139.0 173 49.7
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.3e-30 137.1 202 44.1
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 2.1e-29 134.8 271 37.6
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.4e-28 132.1 433 29.3
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 4.4e-27 127.1 221 35.3
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 4.6e-24 117.1 585 26.5
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 7.8e-24 116.3 122 56.6
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.3e-22 110.9 206 37.4
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 4.0e-20 104.0 379 26.1
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 7.6e-19 99.8 85 61.2
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 4.9e-18 97.1 137 46.7
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 3.2e-17 94.4 233 34.8
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.3e-15 88.2 294 32.7
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 1.5e-14 85.5 90 51.1
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 2.8e-13 81.3 202 33.2
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.6e-13 80.9 188 34.0
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.4e-12 79.0 506 23.9
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 2.4e-12 78.2 56 66.1
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 5.8e-11 73.6 76 53.9
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 6.4e-10 70.1 270 27.4
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 6.4e-10 70.1 190 32.6
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 2.4e-09 68.2 137 34.3
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 3.0e-07 61.2 54 55.6
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.9e-07 60.8 52 51.9
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.9e-06 58.5 105 43.8
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 2.5e-06 58.2 52 51.9
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 2.5e-06 58.2 52 51.9
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 3.3e-06 57.8 86 46.5
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 9.6e-06 56.2 60 46.7


User provided reference genes

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