Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 5.7e-308 1060.1 531 100.0
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.8e-206 722.2 538 70.3
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 8.0e-201 704.1 516 70.9
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 6.1e-193 677.9 537 66.9
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 8.3e-190 667.5 542 66.2
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.8e-189 666.4 523 67.1
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 3.1e-189 665.6 578 63.5
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-188 663.7 541 65.8
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 2.7e-188 662.5 536 64.4
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.5e-188 662.1 536 64.9
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.7e-188 661.0 536 65.1
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 7.7e-188 661.0 536 65.1
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 3.8e-187 658.7 537 64.8
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 4.1e-181 638.6 540 63.0
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.6e-180 636.7 537 63.3
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.7e-180 636.0 536 63.4
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.7e-179 633.3 541 61.7
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.3e-179 632.9 533 62.5
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 2.3e-179 632.9 533 63.0
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 3.0e-179 632.5 522 62.1
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.9e-179 632.1 499 64.7
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 5.0e-179 631.7 532 62.8
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 5.6e-178 628.2 499 64.3
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.3e-178 627.9 499 64.3
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.4e-176 623.6 540 62.0
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.4e-176 623.6 534 61.6
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.6e-175 619.4 520 62.7
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 2.6e-175 619.4 545 60.7
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 3.4e-175 619.0 516 62.6
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 4.9e-174 615.1 537 60.9
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 4.9e-174 615.1 501 63.1
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.1e-173 614.0 531 62.1
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.9e-173 613.2 517 64.4
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 1.9e-173 613.2 523 63.1
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.4e-173 612.8 533 61.2
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.4e-173 612.8 533 61.2
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.2e-173 612.5 533 61.2
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 9.2e-173 610.9 509 64.0
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 3.5e-172 609.0 532 61.1
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 7.8e-172 607.8 498 65.3
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.9e-171 605.5 534 60.7
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 5.0e-171 605.1 523 61.6
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 6.6e-171 604.7 521 61.6
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.3e-170 602.4 519 61.5
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 5.6e-170 601.7 533 59.5
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 3.6e-169 599.0 523 60.4
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.4e-168 597.0 546 58.4
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 3.1e-168 595.9 547 58.3
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.3e-166 590.5 499 62.5
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.9e-166 589.3 491 62.7
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 6.4e-166 588.2 563 59.1
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 1.9e-165 586.6 503 60.8
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.2e-164 583.9 558 58.1
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 2.7e-164 582.8 522 58.6
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.0e-163 580.9 503 61.0
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.5e-162 577.0 524 58.8
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.1e-161 573.2 503 60.0
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 2.1e-161 573.2 505 60.8
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 6.2e-161 571.6 503 59.8
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 3.4e-159 565.8 537 59.8
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.1e-157 560.8 515 58.3
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 9.2e-157 557.8 513 59.5
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 6.0e-156 555.1 543 57.5
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 7.3e-154 548.1 536 56.9
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 6.8e-152 541.6 447 64.4
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.5e-151 540.4 522 56.7
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 3.8e-150 535.8 510 59.2
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-149 534.3 521 59.9
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.5e-146 523.9 529 54.8
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 3.4e-143 512.7 407 65.1
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 7.1e-141 505.0 575 52.3
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 4.8e-137 492.3 502 54.2
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 7.6e-135 485.0 502 53.6
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 7.6e-135 485.0 424 60.6
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 3.8e-134 482.6 413 63.0
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.9e-126 456.4 332 71.7
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 3.7e-121 439.5 494 49.0
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 3.0e-115 419.9 342 66.4
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 2.0e-111 407.1 356 59.8
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-104 384.8 429 49.7
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 5.3e-104 382.5 523 44.7
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 1.5e-98 364.4 433 49.4
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 3.3e-98 363.2 391 51.4
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.2e-84 318.2 455 43.1
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 7.7e-79 298.9 414 48.1
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.9e-77 294.3 495 40.4
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 6.8e-75 285.8 296 56.8
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-70 271.2 469 37.3
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 6.6e-70 269.2 466 37.3
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.1e-69 268.5 430 40.2
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.6e-69 266.2 459 39.0
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 4.0e-67 260.0 468 36.5
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.5e-66 258.1 472 38.1
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.7e-66 256.1 468 36.8
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 7.5e-66 255.8 201 62.2
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 7.5e-66 255.8 434 37.8
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.2e-65 254.2 440 38.9
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 2.2e-65 254.2 469 36.9
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 3.7e-65 253.4 463 35.9
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.1e-64 250.0 469 38.0
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.9e-63 246.1 425 39.3
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 7.8e-63 245.7 468 35.5
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.0e-62 245.4 473 36.2
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.0e-62 243.8 459 36.4
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-61 240.7 457 37.0
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.5e-61 240.7 441 37.4
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 4.3e-61 240.0 457 36.8
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 9.5e-61 238.8 455 37.4
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.6e-60 238.0 440 38.2
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.8e-60 237.3 450 36.2
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.5e-58 231.5 458 36.2
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.3e-57 228.4 396 39.1
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.2e-57 227.6 430 36.5
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.3e-57 225.7 466 35.4
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 8.3e-57 225.7 421 36.8
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 4.1e-56 223.4 421 36.6
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.1e-56 223.4 396 38.4
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 5.4e-56 223.0 437 36.2
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 4.6e-55 219.9 437 35.7
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 7.8e-55 219.2 437 35.7
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.7e-54 218.0 387 37.0
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 6.6e-54 216.1 440 36.1
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 8.6e-54 215.7 406 36.9
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 3.1e-51 207.2 494 34.0
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 6.8e-51 206.1 389 35.0
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 7.5e-50 202.6 166 58.4
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 4.9e-49 199.9 381 33.6
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.4e-49 199.5 412 35.7
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 4.1e-48 196.8 440 33.0
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 3.5e-47 193.7 595 29.6
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 1.5e-42 178.3 151 57.6
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.5e-42 178.3 411 32.6
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.3e-41 175.3 426 32.6
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 5.8e-34 149.8 189 49.2
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.7e-33 148.3 289 33.6
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.7e-33 148.3 417 31.4
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-32 145.6 109 62.4
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.9e-32 144.8 264 36.7
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.2e-32 144.1 214 40.7
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 9.6e-29 132.5 271 36.5
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.3e-28 132.1 234 35.5
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.4e-24 118.6 154 45.5
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 1.4e-24 118.6 99 61.6
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.2e-24 117.1 254 36.2
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 2.3e-22 111.3 175 41.7
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.6e-20 105.1 141 41.8
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 2.8e-20 104.4 155 38.7
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.8e-20 104.4 149 43.6
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 4.8e-20 103.6 143 41.3
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.9e-19 99.8 111 55.0
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.0e-19 99.4 61 78.7
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 8.4e-17 92.8 80 60.0
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 2.4e-16 91.3 97 55.7
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 4.2e-16 90.5 58 72.4
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 9.3e-16 89.4 144 38.9
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 7.9e-15 86.3 313 27.2
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.3e-14 85.5 66 60.6
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.0e-14 84.3 314 26.8
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.5e-13 82.0 146 34.2
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 1.5e-13 82.0 56 71.4
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.9e-13 81.6 115 38.3
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 3.3e-13 80.9 129 42.6
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 4.3e-13 80.5 109 39.4
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 4.0e-11 73.9 129 32.6
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 4.0e-11 73.9 60 58.3
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 4.5e-10 70.5 159 28.9
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 4.5e-10 70.5 89 42.7
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.8e-09 67.4 85 43.5
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 4.9e-09 67.0 104 44.2
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.4e-09 66.2 41 75.6
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 1.4e-08 65.5 60 53.3
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.4e-08 65.5 61 54.1
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.2e-08 64.3 78 47.4
Lsat_1_v5_gn_8_129341 Lactuca sativa HOM05D003798 ORTHO05D004652 7.1e-08 63.2 90 44.4
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 2.1e-07 61.6 73 46.6
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.5e-07 60.8 84 44.0


User provided reference genes

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