Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 4.4e-136 488.0 258 100.0
TPR.G40231 Trifolium pratense HOM05D006716 ORTHO05D008396 1.1e-19 101.3 206 33.5
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 1.4e-17 94.4 60 98.3
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 1.4e-17 94.4 60 98.3
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 5.3e-17 92.4 60 83.3
TPR.G36640 Trifolium pratense HOM05D006716 ORTHO05D008396 9.1e-17 91.7 199 32.7
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 2.7e-16 90.1 60 80.0
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 4.5e-16 89.4 60 80.0
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 4.5e-16 89.4 60 80.0
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 4.5e-16 89.4 60 90.0
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 5.9e-16 89.0 60 80.0
Medtr5g464730 Medicago truncatula HOM05D006716 ORTHO05D008396 5.9e-16 89.0 198 34.3
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 7.7e-16 88.6 61 77.0
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.0e-15 88.2 60 78.3
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.0e-15 88.2 60 78.3
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 1.0e-15 88.2 60 80.0
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 2.9e-15 86.7 60 76.7
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 3.8e-15 86.3 60 76.7
Medtr5g064160 Medicago truncatula HOM05D006716 ORTHO05D008396 3.8e-15 86.3 222 31.5
TPR.G15037 Trifolium pratense HOM05D006716 ORTHO05D008396 3.8e-15 86.3 204 32.4
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.0e-15 85.9 60 76.7
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 6.5e-15 85.5 60 76.7
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 8.5e-15 85.1 60 75.0
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 8.5e-15 85.1 60 76.7
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.5e-14 84.3 60 76.7
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 1.9e-14 84.0 59 76.3
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.9e-14 84.0 60 75.0
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.5e-14 83.6 60 80.0
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 2.5e-14 83.6 60 75.0
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 2.5e-14 83.6 60 76.7
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 3.2e-14 83.2 60 73.3
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 3.2e-14 83.2 60 73.3
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 3.2e-14 83.2 60 73.3
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 3.2e-14 83.2 60 73.3
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 3.2e-14 83.2 60 76.7
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 3.2e-14 83.2 60 73.3
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 4.2e-14 82.8 60 73.3
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 4.2e-14 82.8 60 73.3
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 4.2e-14 82.8 60 73.3
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 4.2e-14 82.8 60 73.3
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 4.2e-14 82.8 60 73.3
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 5.5e-14 82.4 60 73.3
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 5.5e-14 82.4 60 75.0
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 7.2e-14 82.0 58 72.4
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 7.2e-14 82.0 60 71.7
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 1.2e-13 81.3 60 73.3
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 1.2e-13 81.3 60 71.7
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 1.2e-13 81.3 60 71.7
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 1.2e-13 81.3 60 71.7
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 1.2e-13 81.3 60 71.7
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 1.2e-13 81.3 60 80.0
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 1.6e-13 80.9 59 72.9
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 2.1e-13 80.5 60 70.0
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 2.7e-13 80.1 60 70.0
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 2.7e-13 80.1 60 70.0
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 3.6e-13 79.7 59 72.9
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 4.7e-13 79.3 60 73.3
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 4.7e-13 79.3 60 73.3
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 6.1e-13 79.0 60 70.0
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 8.0e-13 78.6 60 68.3
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 1.0e-12 78.2 60 70.0
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 1.8e-12 77.4 70 64.3
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 1.8e-12 77.4 60 75.0
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 2.3e-12 77.0 60 66.7
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 3.0e-12 76.6 60 70.0
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 4.0e-12 76.3 59 71.2
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 5.2e-12 75.9 60 68.3
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 5.2e-12 75.9 55 70.9
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 5.2e-12 75.9 55 70.9
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 5.2e-12 75.9 60 71.7
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 6.8e-12 75.5 59 74.6
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 6.8e-12 75.5 61 72.1
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 6.8e-12 75.5 60 73.3
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 8.8e-12 75.1 66 65.2
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 8.8e-12 75.1 60 71.7
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 8.8e-12 75.1 60 73.3
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 8.8e-12 75.1 60 73.3
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 8.8e-12 75.1 53 75.5
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 1.2e-11 74.7 60 68.3
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.2e-11 74.7 60 66.7
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.2e-11 74.7 60 66.7
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 1.2e-11 74.7 69 63.8
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 1.2e-11 74.7 60 73.3
DCAR_002644 Daucus carota HOM05D006716 ORTHO05D008396 1.5e-11 74.3 208 32.2
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 1.5e-11 74.3 60 73.3
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 2.0e-11 73.9 61 65.6
Ca_24998_v3 Cicer arietinum L. HOM05D006716 ORTHO05D008396 2.0e-11 73.9 223 32.7
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 2.0e-11 73.9 60 66.7
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.0e-11 73.9 49 79.6
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 2.0e-11 73.9 60 71.7
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 2.6e-11 73.6 60 71.7
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 2.6e-11 73.6 60 70.0
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 2.6e-11 73.6 49 79.6
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 2.6e-11 73.6 61 68.9
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 3.4e-11 73.2 60 65.0
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 4.4e-11 72.8 58 69.0
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 5.7e-11 72.4 62 71.0
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 5.7e-11 72.4 60 66.7
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 7.5e-11 72.0 60 65.0
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.7e-10 70.9 60 68.3
SGA_v2.0_scaffold50G18515 Striga asiatica HOM05D006716 ORTHO05D008396 2.8e-10 70.1 198 28.8
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 3.7e-10 69.7 57 66.7
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 4.8e-10 69.3 85 51.8
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 4.8e-10 69.3 160 30.6
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.1e-09 68.2 88 50.0
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.1e-09 68.2 60 63.3
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 1.8e-09 67.4 58 63.8
Peaxi162Scf00475g00124 Petunia axillaris HOM05D006716 ORTHO05D008396 1.8e-09 67.4 187 31.0
Nitab4.5_0007530g0040 Nicotiana tabacum HOM05D006716 ORTHO05D008396 3.1e-09 66.6 203 29.1
Ah.10g035360 Amaranthus hybridus HOM05D006716 ORTHO05D008396 4.1e-09 66.2 176 34.7
Ah.10g035300 Amaranthus hybridus HOM05D006716 ORTHO05D008396 7.0e-09 65.5 203 33.5
Nitab4.5_0001339g0090 Nicotiana tabacum HOM05D006716 ORTHO05D008396 9.1e-09 65.1 203 28.6
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 1.6e-08 64.3 55 61.8
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 1.6e-08 64.3 55 61.8
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 2.7e-08 63.5 60 71.7
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 3.5e-08 63.2 50 72.0
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 3.5e-08 63.2 214 26.2
Manes.S095408 Manihot esculenta HOM05D006716 ORTHO05D008396 4.5e-08 62.8 208 29.3
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 1.7e-07 60.8 57 63.2
Lj9A35T20 Lonicera japonica HOM05D006716 ORTHO05D008396 2.2e-07 60.5 184 29.3
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 6.5e-07 58.9 204 27.9
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 8.5e-07 58.5 54 63.0
Aqoxy4G01948 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 1.1e-06 58.2 209 25.4
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 1.5e-06 57.8 60 68.3
vmacro12392 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.5e-06 57.8 68 41.2
vmacro15746 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.5e-06 57.8 56 44.6
Rhsim02G0098700 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.9e-06 57.4 56 44.6
Manes.11G055432 Manihot esculenta HOM05D006716 ORTHO05D008396 2.5e-06 57.0 71 42.3
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 3.2e-06 56.6 204 27.5
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 5.5e-06 55.8 60 56.7
Rhsim02G0098800 Rhododendron simsii HOM05D006716 ORTHO05D008396 9.4e-06 55.1 56 44.6


User provided reference genes

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