Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002584 Daucus carota HOM05D006433 ORTHO05D005382 2.1e-138 495.7 257 100.0
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 1.1e-25 121.3 260 36.9
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 1.9e-22 110.5 252 34.9
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 2.7e-21 106.7 155 42.6
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 2.6e-19 100.1 263 33.1
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 5.7e-19 99.0 112 48.2
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 9.7e-19 98.2 131 42.0
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 1.3e-18 97.8 285 33.0
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 2.2e-18 97.1 130 43.1
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 2.2e-18 97.1 123 43.9
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 4.8e-18 95.9 259 33.6
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 4.8e-18 95.9 267 33.3
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 1.1e-17 94.7 130 42.3
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 1.1e-17 94.7 157 38.2
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 2.4e-17 93.6 246 30.5
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 4.1e-17 92.8 274 30.7
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 4.1e-17 92.8 255 31.4
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 1.5e-16 90.9 259 33.2
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 2.6e-16 90.1 97 49.5
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 2.6e-16 90.1 91 50.5
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 4.5e-16 89.4 242 34.3
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 4.5e-16 89.4 275 32.0
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 5.9e-16 89.0 89 49.4
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 5.9e-16 89.0 267 33.3
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 5.9e-16 89.0 143 42.7
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 7.7e-16 88.6 89 49.4
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 7.7e-16 88.6 153 37.3
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 7.7e-16 88.6 149 38.3
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 1.3e-15 87.8 261 33.7
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 1.3e-15 87.8 90 52.2
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.3e-15 87.8 90 52.2
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.3e-15 87.8 90 52.2
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 1.3e-15 87.8 120 42.5
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 1.3e-15 87.8 274 31.0
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 1.7e-15 87.4 180 37.2
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 1.7e-15 87.4 286 29.0
SalBow2G0414 Salvia bowleyana HOM05D006433 ORTHO05D005382 1.7e-15 87.4 155 36.1
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 2.9e-15 86.7 89 48.3
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 2.9e-15 86.7 231 30.3
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 3.8e-15 86.3 90 46.7
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 3.8e-15 86.3 151 42.4
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 5.0e-15 85.9 134 41.0
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 5.0e-15 85.9 103 43.7
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 5.0e-15 85.9 112 42.0
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 5.0e-15 85.9 86 54.7
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 5.0e-15 85.9 266 31.6
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 6.5e-15 85.5 148 38.5
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 6.5e-15 85.5 108 46.3
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 8.5e-15 85.1 81 51.9
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 8.5e-15 85.1 102 43.1
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 8.5e-15 85.1 109 45.0
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 8.5e-15 85.1 271 28.4
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 1.1e-14 84.7 270 30.4
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 1.4e-14 84.3 125 40.8
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 2.5e-14 83.6 290 31.0
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 2.5e-14 83.6 94 43.6
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 3.2e-14 83.2 106 42.5
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 3.2e-14 83.2 281 31.7
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 4.2e-14 82.8 118 44.1
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 5.5e-14 82.4 84 45.2
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 5.5e-14 82.4 247 32.4
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 5.5e-14 82.4 88 47.7
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 7.2e-14 82.0 110 41.8
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 7.2e-14 82.0 270 30.4
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 9.4e-14 81.6 101 43.6
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 9.4e-14 81.6 83 48.2
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 9.4e-14 81.6 83 48.2
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 9.4e-14 81.6 89 48.3
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 1.2e-13 81.3 95 45.3
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 1.2e-13 81.3 271 30.3
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 1.6e-13 80.9 113 41.6
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 2.1e-13 80.5 108 44.4
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 2.1e-13 80.5 83 49.4
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 7.9e-13 78.6 101 41.6
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 1.4e-12 77.8 267 28.5
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 1.8e-12 77.4 84 44.0
Aa31LG3G18330 Aethionema arabicum HOM05D006433 ORTHO05D005382 2.3e-12 77.0 77 50.6
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 2.3e-12 77.0 221 30.8
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 2.3e-12 77.0 221 30.8
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 3.0e-12 76.6 274 28.1
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 3.9e-12 76.3 101 43.6
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 8.8e-12 75.1 132 37.1
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 2.0e-11 73.9 223 28.3
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.6e-11 73.6 254 31.5
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 5.7e-11 72.4 124 36.3
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 5.7e-11 72.4 264 31.4
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 9.7e-11 71.6 141 35.5
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 1.3e-10 71.2 71 45.1
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 1.7e-10 70.9 78 44.9
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 2.2e-10 70.5 123 37.4
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 2.8e-10 70.1 98 43.9
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 3.7e-10 69.7 76 44.7
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 3.7e-10 69.7 76 44.7
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 4.8e-10 69.3 147 36.1
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 4.8e-10 69.3 86 44.2
Sed0004092 Sechium edule HOM05D027220 ORTHO05D005382 4.8e-10 69.3 183 29.0
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 6.3e-10 68.9 70 42.9
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 6.3e-10 68.9 152 31.6
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 8.2e-10 68.6 80 43.8
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 1.4e-09 67.8 77 42.9
ClCG09G004510 Citrullus lanatus HOM05D027220 ORTHO05D005382 2.4e-09 67.0 123 36.6
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 3.1e-09 66.6 95 41.1
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 3.1e-09 66.6 143 31.5
MSTRG.13683 Avicennia marina HOM05D006433 ORTHO05D005382 4.1e-09 66.2 229 29.7
AUR62017700 Chenopodium quinoa HOM05D006433 ORTHO05D005382 4.1e-09 66.2 162 30.9
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 4.1e-09 66.2 72 45.8
BcaNung05094 Brassica carinata HOM05D006433 ORTHO05D005382 7.0e-09 65.5 106 41.5
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 9.1e-09 65.1 83 37.3
DCAR_023460 Daucus carota HOM05D006433 ORTHO05D005382 1.6e-08 64.3 265 27.5
Sc06g0007710 Simmondsia chinensis HOM05D006433 ORTHO05D005382 1.0e-07 61.6 90 43.3
HPP92_007311 Vanilla planifolia HOM05D049803 ORTHO05D051563 1.0e-07 61.6 74 41.9
HPP92_026032 Vanilla planifolia HOM05D006433 ORTHO05D005382 1.3e-07 61.2 180 31.1
GSVIVG01012054001 Vitis vinifera HOM05D001185 ORTHO05D002551 1.3e-07 61.2 115 40.9
Oeu013185.1 Olea europaea HOM05D006433 ORTHO05D005382 2.2e-07 60.5 89 34.8
BcaB01g05621 Brassica carinata HOM05D006433 ORTHO05D005382 5.0e-07 59.3 138 32.6
A03p03690 Brassica napus HOM05D006433 ORTHO05D005382 5.0e-07 59.3 119 33.6
BolC3t12950H Brassica oleracea HOM05D006433 ORTHO05D005382 5.0e-07 59.3 138 32.6
BraA03t09717Z Brassica rapa HOM05D006433 ORTHO05D005382 5.0e-07 59.3 119 33.6
TWI36G1014 Tripterygium wilfordii HOM05D008701 ORTHO05D010238 5.0e-07 59.3 58 50.0
HPP92_022555 Vanilla planifolia HOM05D049803 ORTHO05D051563 5.0e-07 59.3 120 32.5
Zm00001eb045360 Zea mays HOM05D006433 ORTHO05D005382 6.5e-07 58.9 110 30.9
Medtr2g081220 Medicago truncatula HOM05D015882 ORTHO05D014071 8.5e-07 58.5 189 30.2
SEGI_06945 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 8.5e-07 58.5 77 39.0
C03p04180 Brassica napus HOM05D006433 ORTHO05D005382 1.9e-06 57.4 141 29.8
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 1.9e-06 57.4 252 26.6
COL.COLO4_06754 Corchorus olitorius HOM05D008701 ORTHO05D010238 4.2e-06 56.2 105 38.1
HPP92_022556 Vanilla planifolia HOM05D006433 ORTHO05D005382 4.2e-06 56.2 107 34.6
MELO3C023593.2 Cucumis melo HOM05D027220 ORTHO05D005382 9.4e-06 55.1 257 25.7
Oeu063832.1 Olea europaea HOM05D006433 ORTHO05D005382 9.4e-06 55.1 205 24.9
Rhsim06G0192100 Rhododendron simsii HOM05D012187 ORTHO05D021147 9.4e-06 55.1 80 38.8


User provided reference genes

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