Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 0.0e+00 1338.9 671 100.0
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 3.9e-261 904.8 670 69.1
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 3.5e-246 855.1 662 66.3
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 1.0e-245 853.6 671 66.2
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 3.3e-244 848.6 670 65.7
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 9.6e-244 847.0 665 65.4
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 5.8e-241 837.8 618 68.8
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.3e-240 836.6 654 65.4
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 4.9e-240 834.7 672 65.2
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.4e-239 833.2 668 63.6
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 1.2e-238 830.1 654 65.3
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.8e-237 826.2 669 64.1
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 2.3e-237 825.9 654 63.9
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.9e-236 822.8 656 63.4
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 4.8e-235 818.1 679 64.2
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 5.3e-234 814.7 661 61.7
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 7.6e-233 810.8 670 63.1
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 2.9e-232 808.9 650 64.0
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 5.0e-232 808.1 669 62.9
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 6.5e-232 807.7 657 63.9
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 2.1e-230 802.7 666 62.0
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 4.6e-230 801.6 671 62.0
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 6.1e-230 801.2 670 62.8
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 6.1e-230 801.2 693 60.5
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 1.0e-229 800.4 668 62.6
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 1.8e-229 799.7 684 60.7
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 1.5e-228 796.6 671 62.3
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 1.9e-228 796.2 668 62.9
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 3.3e-228 795.4 669 61.6
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 5.7e-228 794.7 665 60.2
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 3.7e-227 792.0 675 61.5
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 6.3e-227 791.2 665 62.1
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.1e-226 790.4 675 61.0
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.4e-226 789.3 671 61.7
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 6.9e-226 787.7 669 60.2
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.7e-224 783.1 655 62.0
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 2.9e-224 782.3 665 60.3
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.9e-223 779.6 698 57.3
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 1.9e-223 779.6 671 60.2
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 1.9e-223 779.6 672 60.7
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 1.9e-223 779.6 672 61.6
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 1.2e-222 776.9 666 61.9
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 7.9e-222 774.2 709 59.2
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 3.0e-221 772.3 673 60.5
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.1e-220 770.4 667 59.1
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 2.0e-220 769.6 671 59.8
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 4.4e-220 768.5 667 59.2
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 9.7e-220 767.3 667 60.0
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 1.3e-219 766.9 670 60.1
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 2.8e-219 765.8 670 60.1
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 4.8e-219 765.0 683 59.0
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 6.3e-219 764.6 661 61.9
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 1.4e-218 763.5 656 60.1
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 1.4e-218 763.5 649 60.9
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.8e-218 763.1 748 53.2
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 4.5e-217 758.4 653 60.6
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 5.9e-217 758.1 676 58.7
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 1.7e-216 756.5 657 60.4
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 2.2e-216 756.1 663 59.9
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 3.2e-215 752.3 661 60.5
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 1.0e-213 747.3 657 60.1
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 3.3e-212 742.3 675 58.4
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 1.7e-208 729.9 709 54.6
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 2.1e-206 723.0 661 57.3
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 5.2e-205 718.4 508 71.7
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 6.7e-205 718.0 708 55.4
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 1.2e-204 717.2 652 59.7
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.5e-204 716.8 665 57.0
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 5.3e-202 708.4 681 55.7
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 4.5e-201 705.3 672 56.2
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 7.7e-201 704.5 681 55.9
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 1.0e-200 704.1 684 54.1
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 6.5e-200 701.4 684 55.6
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.7e-195 686.8 684 55.0
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 4.8e-195 685.3 684 55.0
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 6.3e-195 684.9 676 54.6
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.4e-194 683.7 664 56.5
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 1.8e-194 683.3 661 55.5
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 5.9e-193 678.3 682 54.3
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 7.7e-193 677.9 677 54.4
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.3e-191 672.5 667 55.0
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 1.2e-190 670.6 679 55.8
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 2.6e-188 662.9 671 53.5
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 6.3e-187 658.3 519 65.9
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 1.2e-185 654.1 510 65.9
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 3.5e-185 652.5 643 54.0
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.5e-183 647.1 472 70.3
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 2.4e-178 629.8 669 52.2
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 2.6e-172 609.8 647 51.8
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 1.4e-165 587.4 657 51.0
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 9.9e-164 581.3 532 60.3
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 3.4e-156 556.2 672 46.1
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 3.9e-152 542.7 515 58.3
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 1.1e-149 534.6 634 47.5
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 8.1e-134 481.9 652 45.1
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 8.7e-128 461.8 404 61.1
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 5.0e-115 419.5 648 38.4
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 5.9e-108 396.0 657 37.9
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 3.0e-96 357.1 397 52.6
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 2.0e-92 344.4 239 70.7
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.8e-78 297.4 459 40.1
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 8.0e-73 279.3 537 36.5
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.2e-65 255.4 616 32.6
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 3.2e-45 187.6 232 44.0
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 8.6e-43 179.5 192 46.9
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 8.4e-38 162.9 145 57.2
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.7e-36 157.9 405 30.9
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 7.3e-34 149.8 244 35.2
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 9.6e-34 149.4 98 72.4
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 1.9e-29 135.2 87 75.9
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 1.7e-27 128.6 94 66.0
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 1.9e-21 108.6 117 53.8
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 3.9e-19 100.9 110 47.3
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 2.5e-18 98.2 147 42.9
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 5.3e-16 90.5 74 64.9
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 7.1e-13 80.1 78 53.8
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 7.1e-13 80.1 70 57.1
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 1.1e-10 72.8 80 51.2
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 3.4e-07 61.2 65 50.8


User provided reference genes

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