Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 2.2e-105 385.6 186 100.0
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 2.9e-41 172.6 201 51.7
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 3.8e-41 172.2 197 51.8
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 5.0e-41 171.8 197 51.8
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.1e-40 170.6 202 52.5
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 3.2e-40 169.1 204 50.5
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 5.5e-40 168.3 194 46.4
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 2.7e-39 166.0 203 50.7
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.4e-38 163.7 193 52.8
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.8e-38 163.3 206 49.0
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 3.0e-38 162.5 194 49.5
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 3.0e-38 162.5 195 50.3
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 3.0e-38 162.5 200 50.5
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 1.7e-36 156.8 199 49.2
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 3.7e-36 155.6 208 48.1
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 4.8e-36 155.2 197 48.2
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 6.3e-36 154.8 192 49.5
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 6.3e-36 154.8 191 49.7
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 8.3e-36 154.5 195 48.2
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 8.3e-36 154.5 196 48.0
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 1.4e-35 153.7 197 46.7
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.4e-35 153.7 196 44.9
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 1.8e-35 153.3 195 46.7
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 1.2e-34 150.6 194 46.9
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 1.6e-34 150.2 191 48.7
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 3.5e-34 149.1 200 48.0
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 4.5e-34 148.7 186 51.1
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 4.5e-34 148.7 209 45.0
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 4.5e-34 148.7 192 46.9
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 5.9e-34 148.3 197 48.2
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.9e-34 148.3 197 48.2
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.9e-34 148.3 197 48.2
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 5.9e-34 148.3 195 48.7
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 5.9e-34 148.3 195 48.7
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 1.3e-33 147.1 194 51.0
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 1.7e-33 146.7 205 47.3
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 1.7e-33 146.7 204 48.0
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 2.2e-33 146.4 200 45.0
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 8.5e-33 144.4 195 42.1
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.5e-32 143.7 186 51.1
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 1.5e-32 143.7 201 44.8
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 4.2e-32 142.1 178 48.9
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 5.5e-32 141.7 209 45.0
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.2e-32 141.4 189 47.1
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 9.4e-32 141.0 198 47.0
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.2e-31 140.6 190 50.0
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.2e-31 140.6 189 47.1
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.6e-31 140.2 189 47.1
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 2.1e-31 139.8 192 45.8
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 2.7e-31 139.4 193 44.0
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 2.7e-31 139.4 192 44.8
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 3.6e-31 139.0 203 47.3
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 3.6e-31 139.0 195 44.6
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 3.6e-31 139.0 199 46.7
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 4.7e-31 138.7 194 44.3
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 6.1e-31 138.3 195 45.6
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 6.1e-31 138.3 194 45.9
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 8.0e-31 137.9 196 44.9
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 1.0e-30 137.5 192 44.8
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.8e-30 136.7 195 42.6
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.3e-30 136.3 196 44.4
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 2.3e-30 136.3 210 41.0
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 2.3e-30 136.3 194 47.4
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 2.3e-30 136.3 202 45.5
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.0e-30 136.0 195 44.1
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 4.0e-30 135.6 208 44.2
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 5.2e-30 135.2 199 43.2
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.6e-29 132.9 188 45.7
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 4.4e-29 132.1 190 47.4
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 7.5e-29 131.3 212 41.5
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 9.8e-29 131.0 202 42.6
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.7e-28 130.2 206 45.6
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 3.7e-28 129.0 204 44.1
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 8.3e-28 127.9 190 46.3
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 8.3e-28 127.9 200 42.5
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 8.3e-28 127.9 210 43.8
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 8.3e-28 127.9 197 45.2
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 8.3e-28 127.9 200 48.0
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.1e-27 127.5 197 45.2
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.1e-27 127.5 196 42.9
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.4e-27 127.1 199 42.7
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 1.4e-27 127.1 192 43.2
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.4e-27 126.3 207 44.4
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 4.1e-27 125.6 210 41.9
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 5.4e-27 125.2 195 45.1
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 7.0e-27 124.8 191 42.4
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 9.1e-27 124.4 197 45.7
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 9.1e-27 124.4 190 43.7
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 9.1e-27 124.4 191 42.9
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 1.2e-26 124.0 191 39.8
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 3.5e-26 122.5 188 41.5
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 5.9e-26 121.7 207 43.0
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.3e-25 120.6 188 41.5
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 2.3e-25 119.8 197 41.6
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 3.8e-25 119.0 194 42.8
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 3.8e-25 119.0 196 44.4
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 3.8e-25 119.0 194 42.8
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 3.8e-25 119.0 196 44.4
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 5.0e-25 118.6 186 43.0
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 6.6e-25 118.2 213 41.3
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 6.6e-25 118.2 186 46.2
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 8.6e-25 117.9 191 44.0
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 8.6e-25 117.9 198 42.4
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 2.5e-24 116.3 203 42.4
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 3.3e-24 115.9 190 38.9
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 9.5e-24 114.4 202 39.6
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 9.5e-24 114.4 213 37.6
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.6e-23 113.6 197 40.6
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.8e-23 112.8 194 39.7
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 2.8e-23 112.8 187 40.1
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 3.6e-23 112.5 194 39.7
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 4.0e-22 109.0 196 41.3
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 5.2e-22 108.6 216 39.4
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 5.2e-22 108.6 216 39.4
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 6.8e-22 108.2 205 41.5
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 6.8e-22 108.2 209 40.7
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 6.8e-22 108.2 227 39.6
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.2e-21 107.5 200 40.5
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.2e-21 107.5 194 40.2
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 4.4e-21 105.5 189 38.6
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 5.7e-21 105.1 202 38.1
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 1.7e-20 103.6 190 40.0
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 3.7e-20 102.4 194 39.2
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 3.7e-20 102.4 194 39.2
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 3.7e-20 102.4 205 38.5
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 3.7e-20 102.4 194 39.2
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 4.9e-20 102.1 190 39.5
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 6.3e-20 101.7 95 54.7
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 8.3e-20 101.3 201 37.8
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 3.5e-18 95.9 219 37.0
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 5.9e-18 95.1 204 36.3
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 7.8e-18 94.7 185 36.2
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.5e-16 89.7 109 43.1
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 3.1e-14 82.8 187 33.7
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 8.9e-14 81.3 192 31.2
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 1.2e-13 80.9 90 54.4
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 4.9e-12 75.5 195 32.8
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.4e-11 73.2 193 31.6
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 3.2e-11 72.8 73 56.2
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 2.7e-10 69.7 154 37.7
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 3.5e-10 69.3 151 35.8
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 4.3e-08 62.4 118 34.7
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 4.7e-07 58.9 74 47.3
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.1e-06 57.8 167 29.9


User provided reference genes

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