Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.2e-50 203.0 107 100.0
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.2e-50 203.0 107 100.0
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.2e-35 151.0 107 70.1
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.7e-33 146.0 107 67.3
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 2.9e-33 145.2 107 70.1
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 3.8e-33 144.8 107 68.2
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.1e-32 143.3 107 68.2
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 1.4e-32 142.9 107 67.3
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 2.4e-32 142.1 107 66.4
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.6e-31 139.4 107 65.4
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 2.7e-31 138.7 106 68.9
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 6.0e-31 137.5 107 67.3
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.3e-30 136.3 106 68.9
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.3e-30 136.3 107 66.4
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.7e-30 136.0 107 65.4
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 2.3e-30 135.6 107 64.5
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 2.3e-30 135.6 107 68.2
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 3.0e-30 135.2 114 65.8
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 3.0e-30 135.2 107 62.6
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 5.1e-30 134.4 107 65.4
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 5.1e-30 134.4 107 67.3
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.1e-30 134.4 107 67.3
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.1e-30 134.4 107 67.3
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 6.6e-30 134.0 104 70.2
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 8.7e-30 133.7 89 71.9
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 8.7e-30 133.7 107 69.2
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.1e-29 133.3 107 64.5
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 1.1e-29 133.3 106 65.1
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.5e-29 132.9 107 66.4
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.5e-29 132.9 102 64.7
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.9e-29 132.5 104 68.3
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.9e-29 132.5 104 68.3
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 1.9e-29 132.5 107 66.4
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.9e-29 132.5 107 66.4
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.9e-29 132.5 107 66.4
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.5e-29 132.1 107 62.6
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 3.3e-29 131.7 89 71.9
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 3.3e-29 131.7 89 71.9
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 3.3e-29 131.7 114 64.0
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 3.3e-29 131.7 107 63.6
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 4.3e-29 131.3 105 63.8
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 5.6e-29 131.0 91 73.6
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 5.6e-29 131.0 109 67.0
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 7.3e-29 130.6 105 62.9
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 7.3e-29 130.6 104 68.3
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 7.3e-29 130.6 105 61.9
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 7.3e-29 130.6 104 66.3
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 7.3e-29 130.6 107 61.7
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 9.6e-29 130.2 104 64.4
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 9.6e-29 130.2 104 64.4
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 9.6e-29 130.2 105 61.9
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.3e-28 129.8 108 66.7
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.6e-28 129.4 106 64.2
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.6e-28 129.4 104 63.5
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 2.1e-28 129.0 105 61.9
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 2.8e-28 128.6 105 62.9
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 2.8e-28 128.6 107 64.5
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.6e-28 128.3 107 62.6
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 3.6e-28 128.3 105 61.9
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 3.6e-28 128.3 106 64.2
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 3.6e-28 128.3 107 63.6
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 4.8e-28 127.9 106 66.0
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 6.2e-28 127.5 107 61.7
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 6.2e-28 127.5 107 61.7
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 6.2e-28 127.5 125 55.2
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 8.1e-28 127.1 104 66.3
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 8.1e-28 127.1 104 65.4
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 1.1e-27 126.7 105 61.9
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.1e-27 126.7 105 61.0
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 1.1e-27 126.7 105 61.9
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 1.1e-27 126.7 105 61.9
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 1.4e-27 126.3 84 71.4
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.4e-27 126.3 107 61.7
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 1.8e-27 125.9 104 65.4
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 1.8e-27 125.9 107 64.5
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 2.4e-27 125.6 104 67.3
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 2.4e-27 125.6 108 63.0
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 2.4e-27 125.6 105 61.9
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 2.4e-27 125.6 107 64.5
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.4e-27 125.6 105 59.0
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 3.1e-27 125.2 105 61.0
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 3.1e-27 125.2 105 62.9
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 3.1e-27 125.2 107 63.6
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 4.0e-27 124.8 109 62.4
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 5.3e-27 124.4 105 62.9
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 5.3e-27 124.4 93 67.7
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 6.9e-27 124.0 107 62.6
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 6.9e-27 124.0 107 60.7
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 6.9e-27 124.0 128 55.5
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 9.0e-27 123.6 107 63.6
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 9.0e-27 123.6 105 61.9
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 9.0e-27 123.6 105 62.9
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 9.0e-27 123.6 104 64.4
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 1.5e-26 122.9 107 60.7
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.5e-26 122.9 104 63.5
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.5e-26 122.9 104 63.5
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 2.0e-26 122.5 106 61.3
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 2.6e-26 122.1 105 61.9
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 3.4e-26 121.7 107 57.0
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 4.5e-26 121.3 86 65.1
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 5.8e-26 120.9 104 61.5
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 5.8e-26 120.9 107 61.7
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 9.9e-26 120.2 107 61.7
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 9.9e-26 120.2 105 61.9
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 9.9e-26 120.2 93 66.7
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.7e-25 119.4 86 68.6
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.2e-25 119.0 105 61.0
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.9e-25 118.6 108 61.1
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 3.8e-25 118.2 93 66.7
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 3.8e-25 118.2 108 58.3
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 6.4e-25 117.5 120 58.3
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.1e-24 116.7 107 59.8
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.1e-24 116.7 93 64.5
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 1.1e-24 116.7 93 67.7
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.4e-24 116.3 83 68.7
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.9e-24 115.9 104 57.7
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.9e-24 115.9 107 58.9
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 9.3e-24 113.6 87 62.1
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 9.3e-24 113.6 91 60.4
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.2e-23 113.2 88 64.8
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.1e-23 112.5 104 56.7
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.1e-23 112.5 103 59.2
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.7e-23 112.1 91 60.4
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 4.6e-23 111.3 105 59.0
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 4.6e-23 111.3 105 52.4
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 1.3e-22 109.8 102 52.9
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 6.7e-22 107.5 108 54.6
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 9.6e-21 103.6 108 54.6
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.6e-20 102.8 90 57.8
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 8.1e-20 100.5 75 70.7
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 7.1e-16 87.4 76 63.2
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.2e-15 86.7 73 61.6
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.6e-15 86.3 106 51.9
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 4.6e-15 84.7 66 66.7
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 7.9e-15 84.0 84 54.8
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.0e-14 83.6 74 63.5
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 4.3e-13 78.2 86 51.2
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 1.3e-12 76.6 74 60.8
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.3e-12 76.6 74 59.5
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 2.1e-12 75.9 63 60.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 2.8e-12 75.5 73 54.8
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.4e-11 73.2 51 70.6
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.4e-11 72.4 65 56.9
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 3.4e-10 68.6 66 59.1
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 1.6e-07 59.7 68 47.1
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 2.1e-07 59.3 83 48.2
Sp1g13000 Schrenkiella parvula HOM05D005271 ORTHO05D006072 2.7e-07 58.9 50 60.0


User provided reference genes

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