Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 3.3e-121 438.3 216 100.0
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 3.2e-63 245.7 182 66.5
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 2.7e-62 242.7 187 65.2
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 3.5e-62 242.3 179 66.5
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 4.6e-62 241.9 184 65.2
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.0e-61 240.7 184 64.1
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 1.3e-61 240.4 160 70.6
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 1.7e-61 240.0 165 69.1
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 8.6e-61 237.7 186 64.5
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 3.3e-60 235.7 181 64.1
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 3.3e-60 235.7 182 64.3
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 4.3e-60 235.3 189 64.0
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 5.6e-60 235.0 166 69.3
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.1e-59 233.0 181 63.5
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 2.8e-59 232.6 163 70.6
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 2.8e-59 232.6 194 58.2
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 2.8e-59 232.6 179 63.7
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 4.7e-59 231.9 163 70.6
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.7e-59 231.9 164 70.1
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 4.7e-59 231.9 185 62.2
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 6.2e-59 231.5 174 63.8
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 8.1e-59 231.1 196 57.7
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 8.1e-59 231.1 163 70.6
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-58 230.3 164 69.5
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.3e-58 229.6 196 58.2
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 4.0e-58 228.8 165 66.7
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 5.2e-58 228.4 182 64.8
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 8.9e-58 227.6 161 68.3
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 8.9e-58 227.6 163 68.7
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 1.2e-57 227.3 182 62.6
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 1.5e-57 226.9 182 61.0
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.5e-57 226.9 178 64.0
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.5e-57 226.9 170 65.9
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.0e-57 226.5 164 68.3
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 2.0e-57 226.5 164 67.1
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 2.0e-57 226.5 164 67.1
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 2.6e-57 226.1 164 65.2
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 2.6e-57 226.1 181 63.0
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 3.4e-57 225.7 163 68.1
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 3.4e-57 225.7 203 57.6
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 4.4e-57 225.3 183 62.8
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 5.8e-57 224.9 163 68.7
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 7.5e-57 224.6 179 64.2
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 7.5e-57 224.6 164 67.7
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 1.3e-56 223.8 192 58.9
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 1.3e-56 223.8 206 55.8
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.3e-56 223.8 183 62.3
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 1.7e-56 223.4 161 66.5
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 2.2e-56 223.0 164 65.9
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 3.7e-56 222.2 164 65.9
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 3.7e-56 222.2 181 61.3
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 4.9e-56 221.9 164 64.6
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 6.4e-56 221.5 203 57.1
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 8.3e-56 221.1 186 60.2
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.1e-55 220.7 167 67.1
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.4e-55 220.3 162 65.4
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 2.4e-55 219.5 195 57.9
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 2.4e-55 219.5 174 63.2
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 4.1e-55 218.8 163 66.3
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 7.1e-55 218.0 164 63.4
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 7.1e-55 218.0 178 60.7
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 9.2e-55 217.6 193 57.5
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 9.2e-55 217.6 143 69.9
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 1.2e-54 217.2 190 55.8
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 2.1e-54 216.5 181 59.7
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 2.1e-54 216.5 164 63.4
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 2.1e-54 216.5 175 60.0
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 2.1e-54 216.5 161 65.2
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 2.7e-54 216.1 183 60.1
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 2.7e-54 216.1 180 58.3
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 4.6e-54 215.3 180 61.1
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 6.0e-54 214.9 163 65.0
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 6.0e-54 214.9 173 61.8
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 7.8e-54 214.5 167 64.7
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 1.0e-53 214.2 199 54.3
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 1.0e-53 214.2 185 58.4
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.3e-53 213.8 164 62.2
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 1.7e-53 213.4 169 60.9
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 1.7e-53 213.4 163 63.8
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.3e-53 213.0 165 62.4
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 2.3e-53 213.0 204 50.5
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 3.0e-53 212.6 164 61.0
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 5.1e-53 211.8 163 63.8
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 5.1e-53 211.8 164 61.0
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 5.1e-53 211.8 214 50.9
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 8.6e-53 211.1 174 59.2
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.5e-52 210.3 163 64.4
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 2.5e-52 209.5 177 58.2
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.3e-52 209.1 176 59.7
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 3.3e-52 209.1 171 62.0
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 4.3e-52 208.8 161 62.1
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 4.3e-52 208.8 179 57.5
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 4.3e-52 208.8 170 59.4
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.3e-52 208.8 163 62.0
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.6e-52 208.4 176 59.1
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 2.1e-51 206.5 163 59.5
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 3.6e-51 205.7 211 50.7
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 6.2e-51 204.9 167 61.7
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 6.2e-51 204.9 149 65.8
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 8.1e-51 204.5 190 56.3
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 8.1e-51 204.5 164 62.8
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 2.0e-49 199.9 174 56.9
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 2.6e-49 199.5 205 54.6
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.6e-49 199.5 178 58.4
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 3.4e-49 199.1 190 53.2
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 9.9e-49 197.6 214 50.0
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.3e-48 197.2 168 58.9
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.7e-48 196.8 171 57.3
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.2e-48 196.4 170 55.3
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 2.9e-48 196.1 192 54.2
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 4.9e-48 195.3 173 56.1
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.1e-47 194.1 173 55.5
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.1e-47 194.1 173 55.5
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 2.4e-47 193.0 170 59.4
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 5.4e-47 191.8 164 56.7
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.4e-39 167.2 148 54.7
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 1.9e-39 166.8 161 51.6
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 2.4e-39 166.4 141 57.4
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 9.3e-39 164.5 173 52.0
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 4.6e-38 162.2 152 52.0
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.6e-38 162.2 157 54.1
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 2.2e-32 143.3 114 56.1
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 3.8e-32 142.5 215 40.9
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 6.4e-32 141.7 165 47.9
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 7.1e-31 138.3 195 45.6
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.2e-30 137.5 199 40.2
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.1e-28 131.0 180 45.0
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 4.0e-26 122.5 69 75.4
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.6e-25 119.8 69 73.9
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 1.1e-23 114.4 69 71.0
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 6.7e-21 105.1 67 68.7
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 2.8e-19 99.8 73 56.2
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.8e-19 99.0 132 45.5
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 2.7e-14 83.2 162 30.2
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 3.0e-13 79.7 66 59.1
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 7.6e-09 65.1 83 49.4
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.6e-09 65.1 69 56.5
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 3.6e-06 56.2 30 80.0


User provided reference genes

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