Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002300 Daucus carota HOM05D007763 ORTHO05D009537 3.5e-69 266.9 567 100.0
CSS0022156 Camellia sinensis var. sinensis HOM05D007763 ORTHO05D009537 3.3e-27 127.5 105 60.0
Hma1.2p1_0060F.1_g033520 Hydrangea macrophylla HOM05D007763 ORTHO05D009537 2.8e-26 124.4 105 59.0
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 3.6e-26 124.0 105 58.1
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 3.6e-26 124.0 105 58.1
Lj9C466T13 Lonicera japonica HOM05D007763 ORTHO05D009537 1.1e-25 122.5 105 55.2
Dinv38739 Davidia involucrata HOM05D007763 ORTHO05D001128 1.8e-25 121.7 105 60.0
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 1.8e-25 121.7 105 56.2
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 1.5e-24 118.6 105 56.2
RcHm_v2.0_Chr7g0181881 Rosa chinensis HOM05D007763 ORTHO05D009537 2.6e-24 117.9 106 61.3
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 4.4e-24 117.1 104 55.8
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 9.9e-24 115.9 105 54.3
EL10Ac5g11053 Beta vulgaris HOM05D014602 ORTHO05D009537 1.3e-23 115.5 101 56.4
COL.COLO4_36930 Corchorus olitorius HOM05D007763 ORTHO05D009537 1.3e-23 115.5 105 55.2
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 1.3e-23 115.5 104 52.9
Sc12g0006490 Simmondsia chinensis HOM05D007763 ORTHO05D009537 1.3e-23 115.5 104 55.8
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 1.7e-23 115.2 105 55.2
FvH4_5g14610 Fragaria vesca HOM05D007763 ORTHO05D009537 6.4e-23 113.2 105 58.1
FAN18G1924 Fragaria x ananassa HOM05D007763 ORTHO05D009537 6.4e-23 113.2 105 58.1
GSVIVG01007974001 Vitis vinifera HOM05D007763 ORTHO05D010304 8.4e-23 112.8 105 55.2
FAN13G0255 Fragaria x ananassa HOM05D007763 ORTHO05D009537 1.4e-22 112.1 105 57.1
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 4.2e-22 110.5 105 50.5
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 7.1e-22 109.8 101 55.4
TAR622G0770 Trochodendron aralioides HOM05D007763 ORTHO05D009537 7.1e-22 109.8 105 52.4
QL10p017571 Quercus lobata HOM05D007763 ORTHO05D009537 1.2e-21 109.0 105 53.3
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 2.1e-21 108.2 105 49.5
Oeu052450.2 Olea europaea HOM05D007763 ORTHO05D009537 2.7e-21 107.8 99 51.5
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 3.5e-21 107.5 105 49.5
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 4.6e-21 107.1 102 53.9
Manes.14G081200 Manihot esculenta HOM05D007763 ORTHO05D009537 6.0e-21 106.7 105 54.3
Prupe.5G197300 Prunus persica HOM05D007763 ORTHO05D009537 7.9e-21 106.3 104 54.8
MSTRG.11374 Avicennia marina HOM05D007763 ORTHO05D009537 1.3e-20 105.5 105 47.6
Migut.I00207 Erythranthe guttata HOM05D007763 ORTHO05D009537 2.3e-20 104.8 105 46.7
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 2.3e-20 104.8 105 48.6
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 3.0e-20 104.4 104 51.9
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 6.6e-20 103.2 105 50.5
Cc04_g15160 Coffea canephora HOM05D007763 ORTHO05D009537 1.9e-19 101.7 104 49.0
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 2.5e-19 101.3 105 45.7
PSO017G0499 Papaver somniferum HOM05D007763 ORTHO05D009537 2.1e-18 98.2 104 48.1
Peaxi162Scf00013g00410 Petunia axillaris HOM05D007763 ORTHO05D009537 3.1e-17 94.4 96 54.2
HanXRQChr08g0236691 Helianthus annuus HOM05D007763 ORTHO05D009537 4.0e-17 94.0 105 42.9
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 9.0e-17 92.8 98 45.9
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 2.0e-16 91.7 104 47.1
Aa31LG11G2020 Aethionema arabicum HOM05D007763 ORTHO05D009537 9.9e-16 89.4 104 43.3
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 8.4e-15 86.3 106 44.3
CDE04G3021 Ceratophyllum demersum HOM05D007763 ORTHO05D000003 2.4e-14 84.7 105 42.9
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 2.4e-14 84.7 106 44.3
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 5.5e-14 83.6 101 44.6
Aqoxy2G01348 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 9.3e-14 82.8 97 42.3
AUR62008445 Chenopodium quinoa HOM05D007763 ORTHO05D009537 2.7e-13 81.3 104 43.3
LjContig00102g0005353 Lotus japonicus HOM05D000001 ORTHO05D010304 7.9e-13 79.7 91 47.3
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 1.0e-12 79.3 104 43.3
C09p08190 Brassica napus HOM05D007763 ORTHO05D009537 1.0e-12 79.3 104 43.3
BolC9t53731H Brassica oleracea HOM05D007763 ORTHO05D009537 1.0e-12 79.3 104 43.3
CsaV3_5G025970 Cucumis sativus L. HOM05D007763 ORTHO05D009537 2.3e-12 78.2 101 42.6
THA.LOC104801471 Tarenaya hassleriana HOM05D007763 ORTHO05D009537 1.1e-11 75.9 104 38.5
AT5G61400 Arabidopsis thaliana HOM05D007763 ORTHO05D009537 1.5e-11 75.5 104 38.5
AL8G38070 Arabidopsis lyrata HOM05D007763 ORTHO05D009537 1.9e-11 75.1 104 38.5
Carub.0008s2207 Capsella rubella HOM05D007763 ORTHO05D009537 1.9e-11 75.1 104 40.4
CARHR275160 Cardamine hirsuta HOM05D007763 ORTHO05D009537 5.6e-11 73.6 104 37.5
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 9.6e-11 72.8 101 38.6
BcaNung06902 Brassica carinata HOM05D007763 ORTHO05D009537 1.6e-10 72.0 104 40.4
BraA09t36381Z Brassica rapa HOM05D007763 ORTHO05D009537 2.8e-10 71.2 104 40.4
Solyc06g069700.4 Solanum lycopersicum HOM05D007763 ORTHO05D009537 4.8e-10 70.5 77 49.4
Sopen06g027000 Solanum pennellii HOM05D007763 ORTHO05D009537 4.8e-10 70.5 77 49.4
TPR.G11825 Trifolium pratense HOM05D007763 ORTHO05D009537 4.8e-10 70.5 93 39.8
MBI02_g14230_MAGBIO Magnolia biondii HOM05D007763 ORTHO05D011706 1.1e-09 69.3 79 45.6
Phvul.009G185566 Phaseolus vulgaris HOM05D007763 ORTHO05D009537 3.1e-09 67.8 90 40.0
Psat5g201000 Pisum sativum HOM05D007763 ORTHO05D009537 4.0e-09 67.4 61 50.8
Ca_14664_v3 Cicer arietinum L. HOM05D007763 ORTHO05D009537 6.9e-09 66.6 92 43.5
Os09g0417500 Oryza sativa ssp. japonica HOM05D007763 ORTHO05D009537 1.2e-08 65.9 59 54.2
Nitab4.5_0004286g0010 Nicotiana tabacum HOM05D007763 ORTHO05D009537 2.0e-08 65.1 50 56.0
ECA246G2275 Erigeron canadensis HOM05D007763 ORTHO05D009537 2.6e-08 64.7 103 55.3
Hund02629 Selenicereus undatus HOM05D007763 ORTHO05D019789 2.6e-08 64.7 50 60.0
Atru.chr12.1664 Acer truncatum HOM05D007763 ORTHO05D009537 3.4e-08 64.3 70 44.3
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 3.4e-08 64.3 96 39.6
Zm00001eb312410 Zea mays HOM05D007763 ORTHO05D009537 4.5e-08 63.9 59 52.5
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 5.8e-08 63.5 85 40.0
Nitab4.5_0003021g0070 Nicotiana tabacum HOM05D007763 ORTHO05D009537 5.8e-08 63.5 47 57.4
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 7.6e-08 63.2 85 40.0
CAN.G587.9 Capsicum annuum HOM05D007763 ORTHO05D009537 1.9e-06 58.5 67 49.3
ATR1127G168 Amborella trichopoda HOM05D007763 ORTHO05D009537 2.5e-06 58.2 108 34.3
vmacro17568 Vaccinium macrocarpon HOM05D007763 ORTHO05D009537 3.2e-06 57.8 105 41.0


User provided reference genes

Program Settings