Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002222 Daucus carota HOM05D000519 ORTHO05D000959 2.8e-64 248.4 126 100.0
DCAR_002225 Daucus carota HOM05D000519 ORTHO05D000959 6.4e-16 87.8 124 41.9
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 3.0e-13 79.0 86 44.2
CAN.G5949.1 Capsicum annuum HOM05D000519 ORTHO05D000959 1.1e-12 77.0 124 37.1
CAN.G1529.1 Capsicum annuum HOM05D000519 ORTHO05D000959 6.2e-11 71.2 100 39.0
Peaxi162Scf00924g00034 Petunia axillaris HOM05D000519 ORTHO05D000959 3.1e-10 68.9 124 34.7
CAN.G1263.18 Capsicum annuum HOM05D000519 ORTHO05D000959 4.0e-10 68.6 96 37.5
CARHR173800 Cardamine hirsuta HOM05D000519 ORTHO05D000959 4.0e-10 68.6 108 38.9
Rhsim13G0144500 Rhododendron simsii HOM05D000519 ORTHO05D000959 4.0e-10 68.6 110 31.8
CAN.G370.1 Capsicum annuum HOM05D000519 ORTHO05D000959 5.3e-10 68.2 110 35.5
Dinv13973 Davidia involucrata HOM05D000519 ORTHO05D000959 9.0e-10 67.4 101 33.7
Peaxi162Scf00924g00031 Petunia axillaris HOM05D000519 ORTHO05D000959 9.0e-10 67.4 124 33.9
TAR629G0911 Trochodendron aralioides HOM05D000519 ORTHO05D000959 2.0e-09 66.2 100 31.0
GSVIVG01003320001 Vitis vinifera HOM05D000519 ORTHO05D000959 2.0e-09 66.2 110 37.3
Peaxi162Scf00924g00023 Petunia axillaris HOM05D000519 ORTHO05D000959 2.6e-09 65.9 124 33.1
Nitab4.5_0001109g0080 Nicotiana tabacum HOM05D000519 ORTHO05D000959 4.5e-09 65.1 104 35.6
Peaxi162Scf00924g00035 Petunia axillaris HOM05D000519 ORTHO05D000959 4.5e-09 65.1 124 33.1
Nn5g27758 Nelumbo nucifera HOM05D000519 ORTHO05D000959 5.8e-09 64.7 95 31.6
Peaxi162Scf00924g00032 Petunia axillaris HOM05D000519 ORTHO05D000959 5.8e-09 64.7 124 33.1
Nitab4.5_0001735g0110 Nicotiana tabacum HOM05D000519 ORTHO05D000959 9.9e-09 63.9 125 36.0
Sopen05g032610 Solanum pennellii HOM05D000519 ORTHO05D000959 1.7e-08 63.2 100 40.0
CAN.G449.20 Capsicum annuum HOM05D000519 ORTHO05D000959 2.2e-08 62.8 92 39.1
PGSC0003DMG400041780 Solanum tuberosum HOM05D000519 ORTHO05D000959 2.2e-08 62.8 103 35.9
PGSC0003DMG400047215 Solanum tuberosum HOM05D000519 ORTHO05D000959 2.2e-08 62.8 110 33.6
Hma1.2p1_0657F.1_g197050 Hydrangea macrophylla HOM05D000519 ORTHO05D000959 2.9e-08 62.4 105 33.3
Carub.0008s0023 Capsella rubella HOM05D000519 ORTHO05D000959 3.8e-08 62.0 73 39.7
Nitab4.5_0000143g0140 Nicotiana tabacum HOM05D000519 ORTHO05D016886 4.9e-08 61.6 123 30.9
Nitab4.5_0005135g0030 Nicotiana tabacum HOM05D000519 ORTHO05D000959 4.9e-08 61.6 103 38.8
Solyc05g054120.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 4.9e-08 61.6 100 37.0
AT5G47550 Arabidopsis thaliana HOM05D000519 ORTHO05D000959 6.4e-08 61.2 102 35.3
BcaB07g30638 Brassica carinata HOM05D000519 ORTHO05D000959 6.4e-08 61.2 98 35.7
Gohir.D06G160800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 6.4e-08 61.2 65 46.2
Gorai.010G187700 Gossypium raimondii HOM05D000519 ORTHO05D000959 6.4e-08 61.2 65 46.2
Oeu047064.1 Olea europaea HOM05D000519 ORTHO05D000959 6.4e-08 61.2 111 33.3
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 8.4e-08 60.8 77 37.7
Sopen11g007140 Solanum pennellii HOM05D000519 ORTHO05D000959 8.4e-08 60.8 110 30.0
PGSC0003DMG402023603 Solanum tuberosum HOM05D000519 ORTHO05D000959 8.4e-08 60.8 103 30.1
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 1.1e-07 60.5 74 39.2
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 1.1e-07 60.5 72 44.4
DCAR_002223 Daucus carota HOM05D000519 ORTHO05D000959 1.1e-07 60.5 125 34.4
HanXRQChr04g0096501 Helianthus annuus HOM05D000519 ORTHO05D000959 1.1e-07 60.5 88 36.4
Nn3g21163 Nelumbo nucifera HOM05D000519 ORTHO05D000959 1.1e-07 60.5 100 31.0
CAN.G1263.20 Capsicum annuum HOM05D000519 ORTHO05D000959 1.4e-07 60.1 115 33.0
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 1.4e-07 60.1 108 29.6
Nn3g21162 Nelumbo nucifera HOM05D000519 ORTHO05D000959 1.4e-07 60.1 100 31.0
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 1.4e-07 60.1 84 38.1
Aqoxy1G04038 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 1.9e-07 59.7 70 38.6
Aqoxy1G04041 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 1.9e-07 59.7 116 29.3
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 1.9e-07 59.7 86 31.4
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.9e-07 59.7 65 43.1
Gohir.D06G160600 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.9e-07 59.7 69 40.6
Gorai.010G187300 Gossypium raimondii HOM05D000519 ORTHO05D000959 1.9e-07 59.7 69 40.6
Sopen04g006910 Solanum pennellii HOM05D000519 ORTHO05D000959 1.9e-07 59.7 104 34.6
Haze_06945 Corylus avellana HOM05D000519 ORTHO05D000959 2.4e-07 59.3 89 38.2
HanXRQChr04g0096491 Helianthus annuus HOM05D000519 ORTHO05D000959 2.4e-07 59.3 99 33.3
Os03g0429000 Oryza sativa ssp. japonica HOM05D000519 ORTHO05D000959 2.4e-07 59.3 89 34.8
Thhalv10017424m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 3.2e-07 58.9 90 34.4
HanXRQChr04g0096521 Helianthus annuus HOM05D000519 ORTHO05D000959 3.2e-07 58.9 94 33.0
Manes.03G153900 Manihot esculenta HOM05D000519 ORTHO05D000959 3.2e-07 58.9 69 46.4
Solyc11g012385.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 3.2e-07 58.9 110 29.1
Aqoxy1G04040 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 4.2e-07 58.5 100 34.0
Nn5g27762 Nelumbo nucifera HOM05D000519 ORTHO05D000959 4.2e-07 58.5 102 33.3
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 4.2e-07 58.5 69 39.1
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 5.5e-07 58.2 73 35.6
Migut.M01410 Erythranthe guttata HOM05D000519 ORTHO05D000959 5.5e-07 58.2 112 32.1
CARHR126700 Cardamine hirsuta HOM05D000519 ORTHO05D000959 7.1e-07 57.8 117 29.9
Nn5g27763 Nelumbo nucifera HOM05D000519 ORTHO05D000959 9.3e-07 57.4 102 32.4
Nitab4.5_0004646g0100 Nicotiana tabacum HOM05D000519 ORTHO05D000959 9.3e-07 57.4 92 32.6
HanXRQChr04g0096481 Helianthus annuus HOM05D000519 ORTHO05D000959 1.2e-06 57.0 105 34.3
Lalb_Chr15g0088031 Lupinus albus HOM05D000519 ORTHO05D000959 1.2e-06 57.0 86 32.6
Oeu009405.1 Olea europaea HOM05D000519 ORTHO05D000959 1.2e-06 57.0 86 33.7
AL4G28250 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 1.6e-06 56.6 74 37.8
Ciclev10009506m.g Citrus clementina HOM05D000519 ORTHO05D000959 1.6e-06 56.6 117 32.5
Duzib160G0143 Durio zibethinus HOM05D000519 ORTHO05D000959 1.6e-06 56.6 89 40.4
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 1.6e-06 56.6 58 39.7
Ciclev10017209m.g Citrus clementina HOM05D000519 ORTHO05D000959 2.1e-06 56.2 78 34.6
HanXRQChr04g0096511 Helianthus annuus HOM05D000519 ORTHO05D000959 2.1e-06 56.2 115 33.9
Sed0023459 Sechium edule HOM05D000519 ORTHO05D000959 2.1e-06 56.2 82 35.4
PGSC0003DMG400008460 Solanum tuberosum HOM05D000519 ORTHO05D000959 2.1e-06 56.2 104 37.5
C09p31850 Brassica napus HOM05D000519 ORTHO05D000959 2.7e-06 55.8 92 35.9
CAN.G1263.16 Capsicum annuum HOM05D000519 ORTHO05D000959 2.7e-06 55.8 123 28.5
ClCG01G010410 Citrullus lanatus HOM05D000519 ORTHO05D000959 2.7e-06 55.8 74 40.5
Duzib205G0308 Durio zibethinus HOM05D000519 ORTHO05D000959 2.7e-06 55.8 65 38.5
Gohir.D06G160700 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.7e-06 55.8 65 40.0
Gorai.010G187500 Gossypium raimondii HOM05D000519 ORTHO05D000959 2.7e-06 55.8 65 40.0
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 2.7e-06 55.8 97 32.0
CAN.G696.24 Capsicum annuum HOM05D000519 ORTHO05D000959 3.5e-06 55.5 86 32.6
CAN.G696.25 Capsicum annuum HOM05D000519 ORTHO05D000959 3.5e-06 55.5 86 32.6
Ciclev10003263m.g Citrus clementina HOM05D000519 ORTHO05D000959 3.5e-06 55.5 85 32.9
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 3.5e-06 55.5 65 40.0
PGR042G1719 Punica granatum HOM05D000519 ORTHO05D000959 3.5e-06 55.5 84 35.7
RcHm_v2.0_Chr5g0001151 Rosa chinensis HOM05D000519 ORTHO05D000959 3.5e-06 55.5 57 43.9
Manes.08G041000 Manihot esculenta HOM05D000519 ORTHO05D000959 4.6e-06 55.1 65 44.6
Nitab4.5_0003626g0060 Nicotiana tabacum HOM05D015638 ORTHO05D016886 4.6e-06 55.1 112 33.0
Nitab4.5_0007568g0010 Nicotiana tabacum HOM05D015638 ORTHO05D016886 4.6e-06 55.1 112 31.2
Sc24g0000290 Simmondsia chinensis HOM05D000519 ORTHO05D000959 4.6e-06 55.1 78 34.6
QL05p084144 Quercus lobata HOM05D000519 ORTHO05D000959 6.0e-06 54.7 82 34.1
Psat4g004160 Pisum sativum HOM05D000519 ORTHO05D000959 7.9e-06 54.3 91 34.1
Solyc04g014780.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 7.9e-06 54.3 106 32.1
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 7.9e-06 54.3 110 32.7
Zm00001eb021060 Zea mays HOM05D000519 ORTHO05D000959 7.9e-06 54.3 114 32.5


User provided reference genes

Program Settings