Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.3e-164 583.2 332 100.0
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 3.1e-49 199.9 346 42.2
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 3.1e-49 199.9 352 46.3
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 2.2e-47 193.7 363 40.5
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.4e-47 192.2 365 41.4
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.1e-46 189.5 359 40.9
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 4.6e-45 186.0 344 40.7
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 8.6e-44 181.8 368 39.7
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 3.3e-43 179.9 359 39.6
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 5.6e-43 179.1 309 43.4
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 1.6e-42 177.6 324 42.0
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 3.6e-42 176.4 369 38.2
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 4.7e-42 176.0 372 37.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 6.2e-42 175.6 330 38.5
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.4e-41 174.5 359 39.8
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.3e-41 173.7 335 41.5
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.3e-41 173.7 352 42.0
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 4.0e-41 172.9 318 41.2
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 5.2e-41 172.6 352 42.0
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.4e-40 169.5 353 39.7
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 1.3e-39 167.9 340 39.7
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 2.2e-39 167.2 353 40.5
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 3.7e-39 166.4 336 39.0
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 4.9e-39 166.0 328 37.2
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.4e-38 164.5 342 39.5
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.9e-38 164.1 359 36.2
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.9e-38 164.1 331 39.0
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.9e-38 164.1 356 39.3
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 4.1e-38 162.9 331 37.8
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 9.2e-38 161.8 365 36.4
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.7e-37 160.2 312 40.4
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.6e-37 159.5 355 39.2
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.3e-36 157.9 349 39.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 2.3e-36 157.1 342 38.6
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 2.3e-36 157.1 365 38.4
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 5.1e-36 156.0 368 35.3
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 8.6e-36 155.2 349 38.7
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.1e-35 154.8 357 40.6
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.9e-35 154.1 349 35.5
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.9e-35 154.1 322 37.6
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.9e-35 154.1 323 38.7
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 2.5e-35 153.7 348 35.6
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.3e-35 152.9 368 37.5
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.3e-35 152.9 371 41.2
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 5.6e-35 152.5 332 36.7
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 9.5e-35 151.8 354 36.4
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 9.5e-35 151.8 338 38.8
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.6e-34 151.0 361 38.0
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.7e-34 149.4 346 39.6
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 4.7e-34 149.4 311 43.7
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 6.2e-34 149.1 325 36.9
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.4e-33 147.9 329 42.6
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.1e-33 146.7 354 37.3
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 5.2e-33 146.0 384 36.2
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 5.2e-33 146.0 366 34.7
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.2e-32 144.8 358 35.2
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 3.4e-32 143.3 358 38.0
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 5.8e-32 142.5 379 35.4
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.3e-31 141.4 364 35.7
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.2e-31 140.6 357 35.6
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 3.8e-31 139.8 327 35.2
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 3.8e-31 139.8 349 37.2
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.9e-31 139.4 350 36.0
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 6.4e-31 139.0 337 35.3
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 1.4e-30 137.9 339 36.6
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.4e-30 137.9 366 34.2
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 2.4e-30 137.1 369 34.7
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 3.2e-30 136.7 336 36.0
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 4.2e-30 136.3 324 36.1
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 5.4e-30 136.0 274 43.8
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 5.4e-30 136.0 393 33.6
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.2e-29 134.8 335 34.3
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 1.6e-29 134.4 327 43.1
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.6e-29 134.4 357 33.6
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 2.7e-29 133.7 353 35.1
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.7e-29 133.7 339 36.0
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 3.5e-29 133.3 353 35.1
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 3.5e-29 133.3 354 35.6
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 6.0e-29 132.5 351 35.6
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 6.0e-29 132.5 297 36.7
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 6.0e-29 132.5 366 42.3
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.7e-28 131.0 348 33.9
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 2.3e-28 130.6 412 31.6
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.3e-28 130.6 353 33.7
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.9e-28 129.8 351 34.2
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 3.9e-28 129.8 355 33.8
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 3.9e-28 129.8 359 32.9
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 3.9e-28 129.8 200 44.5
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.6e-28 129.0 363 32.5
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 8.7e-28 128.6 329 35.0
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 8.7e-28 128.6 354 34.5
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 1.1e-27 128.3 350 35.1
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.9e-27 127.5 353 32.9
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 2.5e-27 127.1 355 34.4
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 2.5e-27 127.1 370 34.3
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 2.5e-27 127.1 355 34.4
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 2.5e-27 127.1 355 34.4
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 2.5e-27 127.1 292 43.2
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 4.3e-27 126.3 379 35.9
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 4.3e-27 126.3 330 36.1
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 7.3e-27 125.6 343 33.5
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 9.6e-27 125.2 338 33.7
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.6e-26 124.4 377 37.7
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 3.6e-26 123.2 323 36.8
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.6e-26 123.2 420 30.2
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 4.7e-26 122.9 340 33.5
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 4.7e-26 122.9 320 34.4
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 6.2e-26 122.5 343 34.1
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 1.4e-25 121.3 336 33.0
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 3.1e-25 120.2 344 33.1
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.0e-25 119.8 362 37.0
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 5.3e-25 119.4 320 37.8
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 5.3e-25 119.4 330 32.1
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 6.9e-25 119.0 351 33.0
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 6.9e-25 119.0 348 32.2
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 9.0e-25 118.6 343 33.2
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 9.0e-25 118.6 318 34.0
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 9.0e-25 118.6 347 36.6
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.4e-24 116.3 320 31.9
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 9.9e-24 115.2 310 33.2
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.2e-23 114.0 289 32.5
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.2e-23 114.0 375 31.2
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 2.9e-23 113.6 343 33.5
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 1.4e-22 111.3 158 46.8
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.1e-21 107.5 189 40.2
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.1e-21 107.5 360 29.7
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 8.7e-20 102.1 184 39.1
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 8.7e-20 102.1 305 32.1
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.5e-19 101.3 276 33.0
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.5e-19 101.3 254 34.3
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 4.3e-19 99.8 342 33.0
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.6e-18 97.8 156 42.9
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.8e-17 94.4 108 49.1
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.8e-17 94.4 339 30.1
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.8e-17 94.4 319 37.6
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 6.9e-17 92.4 338 32.5
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 5.8e-16 89.4 178 43.8
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.3e-15 88.2 356 28.9
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 1.7e-15 87.8 353 37.4
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.9e-15 87.0 203 36.9
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.1e-14 85.1 336 28.6
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-14 84.3 357 28.6
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.8e-12 77.8 283 28.3
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 2.3e-12 77.4 155 40.0
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 6.2e-10 69.3 123 37.4
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 2.6e-08 63.9 372 25.5
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.7e-07 61.2 142 35.2
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 8.4e-07 58.9 360 26.4
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.4e-06 58.2 273 31.9
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 3.2e-06 57.0 73 47.9
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 5.5e-06 56.2 210 33.8


User provided reference genes

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