Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1530.8 756 100.0
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1286.6 776 81.3
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1180.2 782 73.7
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1179.9 782 74.3
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1177.2 776 74.7
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1176.0 781 73.8
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1175.6 780 74.0
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1174.8 779 73.8
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1162.9 774 72.5
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1160.2 773 74.1
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1159.4 782 72.9
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1156.7 780 72.3
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1155.2 817 70.5
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1154.8 778 72.9
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1153.3 767 72.9
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1152.5 823 69.5
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1152.1 780 72.7
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1151.3 775 72.5
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1149.0 822 69.8
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1148.7 773 73.6
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1144.0 771 71.7
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1144.0 776 71.9
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1141.7 771 72.2
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1139.0 776 71.6
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1137.5 769 71.7
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1136.7 768 72.3
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1135.9 777 71.3
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1135.6 774 71.4
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1135.6 768 72.3
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1135.2 776 71.1
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1134.0 768 72.4
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1133.6 780 72.3
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1128.6 774 70.9
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1128.2 781 70.9
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1125.5 782 70.5
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1124.8 775 71.1
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1124.0 768 71.1
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1124.0 780 71.9
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1117.4 775 71.4
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1116.7 772 71.1
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1113.6 771 70.7
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1110.1 754 72.9
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1107.8 772 70.3
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1107.4 770 69.4
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1106.7 763 72.3
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1105.1 756 71.4
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1104.4 777 70.5
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1102.4 772 69.4
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1100.5 768 69.8
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1098.6 775 70.1
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1097.0 765 71.4
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1095.5 782 69.8
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1094.3 774 69.4
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1085.1 770 68.8
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1083.9 772 68.8
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1083.6 775 69.3
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1082.4 773 68.4
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1081.6 775 68.8
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1081.6 773 68.6
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1080.9 888 63.0
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1076.2 771 67.8
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 5.2e-312 1074.3 773 68.4
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 1.6e-311 1072.4 773 67.8
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 3.6e-311 1071.2 767 67.5
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 4.7e-311 1070.8 761 69.8
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 7.8e-311 1070.1 770 67.9
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 1.0e-310 1069.7 773 67.5
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 1.3e-310 1069.3 771 67.8
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 5.1e-310 1067.4 771 67.6
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 7.4e-309 1063.5 772 66.7
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 8.2e-308 1060.1 767 67.5
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 4.5e-306 1054.3 790 66.7
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 5.8e-306 1053.9 767 67.5
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 7.6e-306 1053.5 772 67.1
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 6.5e-305 1050.4 771 66.7
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 8.4e-305 1050.0 772 66.6
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 1.4e-304 1049.3 766 66.2
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 1.9e-304 1048.9 780 65.8
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 2.5e-304 1048.5 777 66.5
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 5.5e-304 1047.3 747 68.4
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 5.1e-302 1040.8 777 66.0
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 1.8e-299 1032.3 767 66.4
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 2.0e-298 1028.9 684 73.0
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 4.5e-298 1027.7 709 71.5
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 1.6e-295 1019.2 775 65.2
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 7.9e-295 1016.9 777 65.1
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 3.0e-294 1015.0 732 68.3
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 5.7e-293 1010.7 750 67.1
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 6.3e-292 1007.3 780 64.5
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 1.1e-291 1006.5 759 66.4
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 9.1e-291 1003.4 665 73.2
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 7.2e-288 993.8 776 63.5
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 2.2e-284 982.2 662 71.8
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.4e-283 979.5 666 71.8
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 8.5e-281 970.3 776 62.4
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 5.5e-280 967.6 735 65.7
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 6.5e-273 944.1 765 64.3
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 4.0e-270 934.9 741 62.3
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 4.8e-268 927.9 661 69.9
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 8.3e-268 927.2 633 72.5
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 1.4e-267 926.4 759 61.5
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 1.0e-265 920.2 748 62.7
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 3.6e-263 911.8 766 58.9
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 8.3e-260 900.6 767 58.9
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 1.7e-257 892.9 748 61.5
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 6.8e-238 827.8 540 73.9
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 4.4e-237 825.1 569 71.2
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 1.9e-235 819.7 665 62.0
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 3.5e-234 815.5 698 59.2
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 6.2e-231 804.7 643 62.1
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 1.3e-209 733.8 511 70.8
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 8.7e-201 704.5 439 77.9
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 2.1e-199 699.9 758 51.3
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 2.7e-170 603.2 447 66.0
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 1.8e-145 520.8 371 70.6
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.7e-140 504.2 603 46.6
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 1.0e-129 468.4 352 64.2
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.5e-120 438.0 273 77.7
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 6.6e-116 422.5 356 57.3
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 2.4e-97 360.9 248 67.3
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 1.9e-83 314.7 249 63.9
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 2.1e-82 311.2 338 51.2
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 1.5e-72 278.5 260 60.4
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 3.4e-72 277.3 266 55.6
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 5.1e-68 263.5 216 64.4
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 4.3e-67 260.4 252 55.6
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.3e-57 226.9 190 58.4
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 2.3e-52 211.5 225 49.8
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.8e-50 204.5 164 65.2
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 1.2e-45 189.1 150 64.7
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.2e-45 189.1 146 67.1
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 2.1e-45 188.3 118 78.0
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 2.0e-43 181.8 148 62.2
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.8e-42 177.2 146 64.4
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-41 174.5 204 46.1
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 9.4e-38 162.9 117 68.4
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.1e-37 161.8 101 73.3
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 4.8e-34 150.6 95 73.7
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.0e-32 145.2 89 79.8
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.7e-32 144.8 87 78.2
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 4.5e-32 144.1 94 73.4
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.3e-31 142.5 87 77.0
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 5.0e-31 140.6 80 77.5
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-30 139.4 93 73.1
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-30 139.4 126 59.5
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-30 139.4 126 59.5
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.9e-30 138.7 89 76.4
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.2e-30 137.9 126 58.7
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.5e-30 137.1 87 73.6
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.5e-30 137.1 79 79.7
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 1.4e-28 132.5 104 67.3
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.5e-27 129.0 198 40.9
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.1e-25 122.9 198 39.9
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.3e-23 115.9 75 73.3
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 6.6e-23 113.6 57 91.2
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 6.6e-23 113.6 57 91.2
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.5e-22 111.7 103 55.3
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 7.3e-22 110.2 86 66.3
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 5.0e-15 87.4 77 53.2
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 6.8e-12 77.0 158 33.5
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-11 76.3 60 63.3
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 1.2e-11 76.3 59 66.1
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.2e-10 72.0 45 68.9
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 9.2e-09 66.6 37 67.6
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.6e-08 65.9 43 62.8
Lsat_1_v5_gn_1_82200 Lactuca sativa HOM05D002111 ORTHO05D002160 4.3e-06 57.8 44 65.9
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 7.3e-06 57.0 77 42.9


User provided reference genes

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