Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 8.8e-221 770.0 393 100.0
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 7.0e-170 600.9 379 80.5
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 3.4e-140 502.3 396 65.4
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.1e-135 487.3 395 63.3
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 2.5e-135 486.1 384 65.4
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.3e-134 483.8 401 63.3
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 3.6e-134 482.3 398 63.1
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.6e-134 482.3 402 62.9
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 4.8e-134 481.9 387 63.6
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 6.2e-134 481.5 365 67.1
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-133 480.3 401 62.8
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 9.0e-133 477.6 384 64.6
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 9.0e-133 477.6 384 63.3
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 6.4e-131 471.5 394 62.9
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 6.4e-131 471.5 395 61.8
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 1.9e-130 469.9 399 61.7
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 1.9e-130 469.9 383 63.4
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 1.9e-130 469.9 398 62.6
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 5.5e-130 468.4 385 63.9
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 9.3e-130 467.6 385 63.9
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.2e-129 467.2 402 61.9
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 2.1e-129 466.5 398 63.3
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 3.5e-129 465.7 385 63.4
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 1.8e-128 463.4 401 61.1
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 3.9e-128 462.2 394 61.4
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 3.3e-127 459.1 388 59.0
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 2.1e-126 456.4 390 60.0
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.1e-126 456.4 383 62.1
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 3.7e-126 455.7 399 61.9
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 8.1e-126 454.5 383 61.9
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 3.1e-125 452.6 397 62.0
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 4.0e-125 452.2 383 61.6
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 1.2e-124 450.7 381 60.6
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 5.8e-124 448.4 402 59.5
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 2.2e-123 446.4 401 58.1
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 3.2e-122 442.6 388 62.1
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 9.3e-122 441.0 387 59.4
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 2.1e-121 439.9 391 60.1
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 1.1e-119 434.1 402 58.2
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 5.7e-119 431.8 391 60.4
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.6e-118 430.3 404 57.7
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 3.7e-118 429.1 384 59.4
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 4.8e-118 428.7 392 60.7
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 4.8e-118 428.7 386 58.0
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 4.8e-118 428.7 387 60.5
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 3.1e-117 426.0 387 54.8
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 6.9e-117 424.9 400 56.8
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 3.4e-116 422.5 385 58.7
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 3.4e-116 422.5 376 59.3
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.7e-115 420.2 400 56.5
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.7e-115 420.2 406 55.9
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 2.9e-115 419.5 385 58.2
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 6.5e-115 418.3 408 56.4
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 7.2e-114 414.8 379 57.0
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 9.3e-114 414.5 389 56.8
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 2.7e-113 412.9 327 63.6
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 6.1e-113 411.8 387 58.7
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.0e-112 411.0 395 57.0
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.8e-112 410.2 386 56.0
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 6.7e-112 408.3 399 57.6
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 6.7e-112 408.3 395 57.0
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.5e-111 407.1 379 55.9
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 4.8e-110 402.1 402 55.7
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 8.2e-110 401.4 386 56.7
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.1e-109 401.0 401 55.1
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 2.4e-109 399.8 397 56.2
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.1e-109 399.4 384 57.6
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 5.3e-109 398.7 398 55.3
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 5.3e-109 398.7 398 55.0
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 5.3e-109 398.7 401 55.9
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 6.9e-109 398.3 394 55.1
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 9.1e-109 397.9 384 57.3
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 1.2e-108 397.5 398 55.5
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 1.5e-108 397.1 398 55.3
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 1.5e-108 397.1 398 55.3
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.0e-108 396.7 395 55.4
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 5.9e-108 395.2 394 54.6
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 5.5e-106 388.7 399 55.4
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 7.2e-106 388.3 386 54.4
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.0e-104 384.4 399 55.4
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 1.4e-104 384.0 398 55.3
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 8.8e-104 381.3 394 53.6
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 8.2e-102 374.8 388 51.3
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 8.2e-102 374.8 388 53.1
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 2.4e-101 373.2 342 57.3
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 4.1e-101 372.5 401 52.9
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 5.3e-101 372.1 399 53.6
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 1.2e-100 370.9 400 53.0
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 1.2e-100 370.9 345 57.7
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 4.5e-100 369.0 397 52.9
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 5.9e-100 368.6 396 53.0
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 5.9e-100 368.6 396 53.0
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 5.9e-100 368.6 394 52.5
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 1.0e-99 367.9 391 53.5
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 5.0e-99 365.5 378 51.9
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.1e-98 364.4 393 51.4
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 2.7e-97 359.8 387 49.9
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.4e-96 357.5 397 51.6
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 6.7e-96 355.1 383 52.2
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 4.1e-93 345.9 343 53.1
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 2.3e-88 330.1 402 49.8
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 2.8e-86 323.2 386 48.4
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 1.2e-84 317.8 383 49.3
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.0e-84 317.0 311 56.3
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.7e-84 316.6 357 49.9
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 5.9e-84 315.5 333 55.0
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 2.2e-78 297.0 267 59.9
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 2.5e-74 283.5 250 58.0
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 3.6e-73 279.6 382 42.1
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 4.0e-72 276.2 227 62.6
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 8.8e-72 275.0 308 51.6
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 1.7e-67 260.8 381 41.2
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.3e-67 260.4 386 47.2
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 8.3e-62 241.9 389 40.1
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 5.0e-51 206.1 365 38.4
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 6.2e-49 199.1 359 36.2
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 6.8e-48 195.7 194 52.6
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 8.9e-48 195.3 397 36.5
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.5e-47 194.5 246 47.6
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 5.8e-47 192.6 162 59.3
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 3.6e-41 173.3 409 33.0
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.4e-24 118.2 108 61.1
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.1e-21 108.6 406 27.1
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 3.0e-19 100.5 236 31.8
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 2.9e-14 84.0 163 36.2
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 9.3e-13 79.0 116 37.9
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 2.7e-12 77.4 171 32.7
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 1.3e-11 75.1 388 24.5
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.2e-07 62.0 69 44.9
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 7.6e-07 59.3 80 40.0


User provided reference genes

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