Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 2.5e-107 392.1 195 100.0
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 2.9e-76 288.9 185 75.7
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 2.9e-76 288.9 191 74.3
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 1.6e-74 283.1 185 74.6
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 6.1e-74 281.2 185 74.1
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 3.0e-73 278.9 187 71.7
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 6.8e-73 277.7 192 69.3
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 6.8e-73 277.7 186 73.7
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.2e-72 276.9 192 69.8
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 1.5e-72 276.6 192 70.8
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.5e-72 276.6 187 70.1
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.5e-72 276.6 192 69.8
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 7.5e-72 274.2 187 69.5
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 1.3e-71 273.5 192 70.3
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 1.3e-71 273.5 195 69.2
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.7e-71 273.1 186 73.1
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 2.2e-71 272.7 191 73.3
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 2.2e-71 272.7 197 68.0
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 2.2e-71 272.7 183 71.6
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 4.9e-71 271.6 189 70.9
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 4.9e-71 271.6 185 73.0
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 6.3e-71 271.2 187 70.6
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 1.1e-70 270.4 188 70.2
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 1.1e-70 270.4 195 68.2
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.1e-70 270.4 186 71.5
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.4e-70 270.0 196 69.4
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.4e-70 270.0 193 67.9
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.8e-70 269.6 193 68.9
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.8e-70 269.6 183 71.0
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 2.4e-70 269.2 192 69.3
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 3.1e-70 268.9 187 69.0
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 3.1e-70 268.9 185 69.2
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 3.1e-70 268.9 189 69.8
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 5.4e-70 268.1 190 69.5
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 5.4e-70 268.1 189 71.4
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 5.4e-70 268.1 196 67.3
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 7.0e-70 267.7 192 65.6
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 1.2e-69 266.9 187 68.4
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 2.0e-69 266.2 187 68.4
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 2.7e-69 265.8 187 69.0
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 3.5e-69 265.4 187 67.9
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 5.9e-69 264.6 183 68.9
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 1.3e-68 263.5 187 68.4
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.3e-68 263.5 196 66.8
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 2.3e-68 262.7 187 66.3
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.3e-68 262.7 186 67.7
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 2.9e-68 262.3 187 67.4
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 2.9e-68 262.3 187 67.4
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 5.0e-68 261.5 187 67.9
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 5.0e-68 261.5 187 67.9
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 5.0e-68 261.5 188 68.1
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 5.0e-68 261.5 186 65.6
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 5.0e-68 261.5 188 68.1
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 8.6e-68 260.8 187 67.4
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.1e-67 260.4 183 68.3
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 1.9e-67 259.6 184 70.7
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 3.3e-67 258.8 184 68.5
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 5.6e-67 258.1 187 66.8
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 7.3e-67 257.7 186 68.3
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 7.3e-67 257.7 188 66.5
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 9.5e-67 257.3 181 68.5
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.6e-66 256.5 183 69.4
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 2.1e-66 256.1 184 67.9
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 2.1e-66 256.1 165 75.8
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.8e-66 255.8 187 65.8
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.8e-66 255.8 187 65.8
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 4.7e-66 255.0 182 67.6
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 8.0e-66 254.2 188 66.0
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 1.8e-65 253.1 179 67.6
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 2.3e-65 252.7 187 66.8
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 4.0e-65 251.9 184 66.3
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 4.0e-65 251.9 188 66.0
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 4.0e-65 251.9 181 66.3
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 4.0e-65 251.9 185 70.3
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 5.2e-65 251.5 182 67.0
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 6.8e-65 251.1 187 66.3
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 8.9e-65 250.8 187 64.7
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 8.9e-65 250.8 184 66.3
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.2e-64 250.4 192 64.6
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.5e-64 250.0 187 64.7
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.5e-64 250.0 188 67.6
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 1.5e-64 250.0 182 67.6
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 2.0e-64 249.6 183 65.6
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 2.0e-64 249.6 187 65.2
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 4.4e-64 248.4 192 63.0
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 4.4e-64 248.4 185 69.2
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 5.7e-64 248.1 187 64.2
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 5.7e-64 248.1 187 64.2
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 5.7e-64 248.1 187 64.2
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 5.7e-64 248.1 189 63.5
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 9.8e-64 247.3 192 63.0
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 2.9e-63 245.7 185 64.9
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 4.9e-63 245.0 185 65.4
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 3.2e-62 242.3 180 64.4
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 9.2e-62 240.7 187 66.3
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.2e-61 240.4 185 64.3
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 1.2e-61 240.4 187 65.8
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 3.5e-61 238.8 186 62.4
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 4.6e-61 238.4 190 62.6
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 1.1e-59 233.8 152 70.4
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 2.3e-57 226.1 206 59.2
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 4.4e-56 221.9 175 62.9
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 2.9e-55 219.2 179 62.6
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 1.9e-54 216.5 187 59.9
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 4.1e-54 215.3 123 80.5
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 2.7e-53 212.6 184 56.5
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 8.1e-50 201.1 149 65.1
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.8e-49 199.9 194 53.1
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.3e-49 199.5 187 56.7
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 2.6e-48 196.1 186 57.0
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 3.7e-47 192.2 185 54.1
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.4e-46 190.3 183 55.2
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 7.1e-46 188.0 144 64.6
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 4.6e-45 185.3 126 73.8
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.0e-45 184.9 123 71.5
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.3e-44 183.7 122 71.3
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 5.1e-44 181.8 146 57.5
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 4.3e-43 178.7 168 53.6
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.4e-40 169.1 124 67.7
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 5.1e-36 155.2 188 46.3
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 6.6e-36 154.8 140 51.4
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 1.1e-33 147.5 90 77.8
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 1.5e-32 143.7 151 47.7
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 2.0e-32 143.3 141 49.6
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 3.8e-31 139.0 84 77.4
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 4.2e-30 135.6 187 43.3
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 4.2e-30 135.6 187 43.3
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 9.9e-24 114.4 146 43.8
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.4e-22 110.5 157 40.1
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.0e-20 104.4 85 58.8
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.5e-19 99.8 59 78.0
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 3.3e-19 99.4 114 42.1
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 1.8e-17 93.6 146 38.4
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.8e-17 93.6 146 38.4
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 9.0e-17 91.3 61 70.5
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.8e-09 67.0 55 56.4
Pp3c6_23360 Physcomitrium patens HOM05D000119 ORTHO05D036702 9.3e-06 54.7 126 29.4


User provided reference genes

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