Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 9.2e-234 813.1 402 100.0
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 3.3e-223 778.1 402 94.5
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 92.5
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 92.5
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 92.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.9e-219 764.2 402 92.5
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 4.9e-219 764.2 402 91.5
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 6.4e-219 763.8 402 92.3
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.9e-218 762.3 402 91.8
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 91.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 90.8
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 90.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 90.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 91.0
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 90.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 91.0
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 90.8
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 90.8
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.8
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.3
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.0
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.5
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.5
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 90.5
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 90.8
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 90.8
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.3
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.5
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.5
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.0
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.5
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 90.0
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.3
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.8
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 90.0
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.8
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 89.8
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 89.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 90.0
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.8
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 90.0
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.8
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 7.4e-215 750.4 416 88.2
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.6
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 90.0
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.6
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.6
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 90.8
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 90.0
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 91.0
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 89.8
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 2.1e-214 748.8 416 88.0
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 90.5
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.6
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.8
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 89.3
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.8
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.8
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 88.6
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 6.2e-214 747.3 401 88.8
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 90.0
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.6
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 89.3
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 88.6
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 90.0
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 89.1
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 87.8
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.5e-212 742.7 402 88.8
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 88.8
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 3.4e-212 741.5 411 87.3
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 89.1
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 89.3
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.6
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 87.8
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 89.1
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 88.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.1
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 88.1
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 88.1
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 88.1
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 88.1
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 88.1
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.1e-210 736.5 417 85.6
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 88.3
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 87.8
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.4e-210 735.3 438 83.6
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.6
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.6
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.1
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 86.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.3
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.3
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.3
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 87.1
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 87.3
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 86.6
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 6.0e-209 730.7 402 86.8
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 87.1
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 86.3
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 86.8
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 85.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 86.8
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.9e-207 725.7 396 87.9
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 4.3e-207 724.5 402 86.3
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 86.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 6.2e-206 720.7 402 85.6
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.1e-205 719.9 401 86.3
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.8e-205 719.2 429 82.5
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.5e-204 716.1 402 85.1
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 4.9e-203 711.1 402 85.3
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 4.9e-203 711.1 441 79.4
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.4e-202 709.5 400 84.5
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.5e-202 708.8 402 85.6
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 5.5e-202 707.6 402 85.8
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.0e-200 703.4 419 83.3
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 8.7e-200 700.3 402 85.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 9.6e-199 696.8 402 83.8
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 3.7e-198 694.9 402 81.3
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 4.5e-196 688.0 402 84.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.2e-193 679.9 375 86.7
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 3.5e-193 678.3 402 81.1
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 1.8e-192 676.0 361 91.1
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 2.3e-192 675.6 357 90.2
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 4.8e-190 667.9 402 78.9
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 8.2e-190 667.2 402 79.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.2e-188 663.3 402 79.9
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 4.6e-185 651.4 360 85.8
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 9.1e-181 637.1 340 91.2
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 1.1e-178 630.2 402 77.6
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 5.5e-178 627.9 402 73.9
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.1e-177 625.9 401 74.1
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.4e-176 623.2 334 90.4
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 5.1e-176 621.3 402 73.9
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.8e-174 615.5 402 77.4
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.0e-171 607.1 403 72.0
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.5e-171 604.0 403 71.2
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 1.0e-168 597.0 402 70.9
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.2e-164 583.6 402 70.6
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.2e-161 573.5 401 67.8
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.4e-159 565.5 403 67.7
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 4.7e-153 545.0 289 89.6
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 2.1e-145 519.6 403 67.5
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 2.2e-142 509.6 419 64.0
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 7.3e-138 494.6 402 64.7
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 8.1e-129 464.5 259 86.1
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 9.5e-122 441.0 394 54.6
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.8e-118 429.1 398 55.0
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 3.6e-113 412.5 276 74.6
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 5.3e-104 382.1 229 81.7
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 7.1e-101 371.7 219 83.6
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 2.7e-100 369.8 219 82.6
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 6.0e-100 368.6 219 81.7
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.3e-81 307.8 300 54.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 5.9e-79 298.9 160 88.8
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.8e-75 287.3 163 84.7
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 1.7e-54 217.6 116 88.8
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 2.4e-32 144.1 86 79.1
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 4.1e-32 143.3 351 27.9
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 9.2e-32 142.1 348 30.7
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 6.4e-17 92.8 47 89.4
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 1.5e-13 81.6 45 77.8
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 2.5e-13 80.9 72 61.1
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-11 73.2 316 23.7


User provided reference genes

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