Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 3.5e-115 418.3 210 100.0
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 3.1e-87 325.5 221 74.7
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.0e-87 325.1 226 74.8
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.5e-86 323.2 222 73.4
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.2e-85 319.3 226 73.0
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 3.7e-85 318.5 216 74.5
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 5.4e-84 314.7 226 71.7
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 6.0e-83 311.2 226 70.8
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.0e-82 310.5 226 70.4
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 5.0e-82 308.1 218 72.0
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-81 307.0 226 70.4
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.1e-81 307.0 227 69.2
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.5e-81 306.6 226 69.0
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.9e-81 306.2 226 67.7
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.3e-81 305.1 216 71.8
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 4.3e-81 305.1 226 68.6
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 9.5e-81 303.9 216 71.3
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 4.7e-80 301.6 219 70.8
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 8.0e-80 300.8 219 68.5
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.4e-79 300.1 226 69.5
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.8e-79 299.7 226 67.7
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.3e-79 299.3 222 67.6
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.3e-79 299.3 222 67.6
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.3e-79 299.3 227 69.2
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 3.1e-79 298.9 229 67.2
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.0e-79 298.5 222 67.6
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.0e-79 298.5 228 65.8
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.0e-79 298.5 228 65.8
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 5.2e-79 298.1 229 67.2
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.9e-79 297.4 228 65.4
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.2e-78 297.0 222 67.1
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.2e-78 297.0 222 68.9
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.5e-78 296.6 226 66.4
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.5e-78 296.6 214 73.4
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 2.0e-78 296.2 226 69.0
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.4e-78 295.0 222 66.7
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 4.4e-78 295.0 236 65.3
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.7e-77 293.1 223 65.9
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 3.7e-77 292.0 207 71.0
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 8.3e-77 290.8 219 70.3
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.1e-76 290.4 223 65.0
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 2.4e-76 289.3 227 65.6
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 7.1e-76 287.7 223 65.9
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 2.1e-75 286.2 226 66.8
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.7e-75 285.8 225 64.0
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 4.6e-75 285.0 224 68.8
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 4.6e-75 285.0 211 69.2
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 6.0e-75 284.6 214 68.7
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 7.8e-75 284.3 229 62.9
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.0e-74 283.9 212 67.5
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 2.3e-74 282.7 223 65.9
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 3.9e-74 282.0 220 67.7
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.9e-74 282.0 224 65.2
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 6.6e-74 281.2 231 64.1
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 8.6e-74 280.8 216 68.1
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.1e-73 280.4 228 63.2
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.9e-73 279.6 219 65.3
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.3e-73 278.5 206 71.8
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 7.3e-73 277.7 215 67.0
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.2e-72 276.9 224 63.4
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 2.1e-72 276.2 224 65.2
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.8e-72 275.8 224 63.8
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.8e-72 275.8 214 65.4
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.6e-72 275.4 217 64.1
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 4.7e-72 275.0 212 66.0
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.7e-72 275.0 215 65.6
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 8.1e-72 274.2 224 64.3
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.8e-71 273.1 225 63.6
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 8.9e-71 270.8 217 66.8
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 8.9e-71 270.8 218 64.2
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 8.9e-71 270.8 225 64.9
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.2e-70 270.4 225 63.1
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 2.0e-70 269.6 219 63.5
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 5.8e-70 268.1 221 62.9
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 9.9e-70 267.3 226 61.5
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.3e-69 266.9 217 62.2
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.3e-69 266.9 211 64.0
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.7e-69 266.5 217 61.8
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.7e-69 266.5 217 62.2
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 6.4e-69 264.6 224 61.2
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 6.4e-69 264.6 213 65.7
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 8.3e-69 264.2 211 63.5
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.4e-68 263.5 221 61.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.2e-68 262.3 211 63.5
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.4e-68 261.5 227 63.4
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.2e-68 260.8 232 59.1
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.6e-67 260.0 221 62.0
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 2.7e-67 259.2 245 59.6
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.7e-67 259.2 168 76.8
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.5e-67 258.8 223 60.5
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.3e-66 256.9 223 59.2
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.1e-66 255.0 206 60.7
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 5.1e-66 255.0 214 60.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.1e-65 253.8 211 63.0
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.9e-65 253.1 221 61.1
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 3.3e-65 252.3 210 59.5
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 5.6e-65 251.5 216 61.1
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 9.6e-65 250.8 214 61.7
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 1.2e-64 250.4 214 61.2
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.8e-64 249.2 213 60.1
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.8e-64 249.2 213 59.6
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.8e-64 249.2 213 60.1
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 4.7e-64 248.4 224 58.9
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 4.7e-64 248.4 213 57.7
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.8e-63 246.5 209 59.3
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 4.0e-63 245.4 216 59.7
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 6.8e-63 244.6 214 60.3
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.8e-63 244.6 213 63.4
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.9e-63 244.2 214 60.3
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.2e-62 243.8 214 59.3
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.5e-62 243.4 214 60.3
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 4.4e-62 241.9 218 56.9
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 7.6e-62 241.1 214 61.2
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 7.6e-62 241.1 210 60.5
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 7.6e-62 241.1 210 60.5
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 9.9e-62 240.7 228 56.6
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-61 240.4 213 59.6
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.3e-61 240.4 227 55.9
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.7e-61 240.0 211 60.2
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 3.8e-61 238.8 213 57.3
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 4.9e-61 238.4 215 60.9
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 4.9e-61 238.4 204 61.3
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 4.2e-60 235.3 199 59.8
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 4.2e-60 235.3 210 59.5
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 7.1e-60 234.6 219 58.4
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.6e-59 233.4 145 75.9
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 4.6e-59 231.9 224 56.7
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 4.6e-59 231.9 205 58.5
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.0e-58 230.7 243 52.3
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 3.9e-58 228.8 224 55.4
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 5.1e-58 228.4 235 54.0
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 2.5e-57 226.1 197 59.4
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 3.6e-56 222.2 210 56.2
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 6.2e-56 221.5 189 62.4
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.8e-55 219.9 152 69.7
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.4e-55 219.5 201 57.2
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 9.0e-55 217.6 211 54.0
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.2e-53 213.0 147 66.7
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.4e-52 210.3 219 51.6
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.4e-52 209.5 209 51.2
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.2e-51 207.2 222 54.1
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.6e-51 206.8 139 68.3
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.7e-50 203.4 209 51.7
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.1e-49 200.7 197 50.8
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.5e-49 199.5 216 51.9
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.3e-49 199.1 130 69.2
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.3e-49 199.1 199 50.3
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 5.6e-49 198.4 213 51.2
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 5.6e-49 198.4 213 49.8
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.1e-48 196.4 217 48.8
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.4e-47 193.7 160 59.4
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.4e-47 193.7 213 50.7
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.4e-47 193.0 219 49.8
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.3e-47 191.8 213 48.8
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 9.0e-47 191.0 148 59.5
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 2.0e-46 189.9 162 60.5
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 2.9e-45 186.0 123 69.1
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 6.4e-45 184.9 266 45.5
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.2e-44 182.2 216 52.8
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.1e-43 179.9 223 44.8
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.7e-43 179.5 149 63.8
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.1e-41 174.1 220 46.4
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.9e-41 173.3 166 51.8
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.6e-40 170.2 216 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 1.1e-39 167.5 177 49.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.8e-39 166.8 139 61.2
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.4e-39 166.4 106 67.9
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.1e-39 166.0 132 58.3
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 7.6e-38 161.4 155 52.3
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.2e-37 159.8 200 49.5
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 5.5e-36 155.2 82 87.8
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.3e-34 150.6 216 45.8
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.3e-34 150.6 216 45.8
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 5.1e-34 148.7 214 44.4
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.6e-27 125.6 88 65.9
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 3.1e-23 112.8 84 64.3
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 5.1e-18 95.5 54 75.9
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 4.8e-16 89.0 52 75.0
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 3.1e-15 86.3 111 52.3


User provided reference genes

Program Settings