Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 3.8e-55 218.0 115 100.0
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.5e-27 126.3 86 73.3
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 4.3e-27 124.8 86 73.3
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.3e-27 124.8 88 72.7
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.7e-27 124.4 88 72.7
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 2.8e-26 122.1 93 69.9
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 4.8e-26 121.3 87 73.6
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 4.8e-26 121.3 87 73.6
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 6.3e-26 120.9 88 71.6
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 8.2e-26 120.6 88 71.6
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.4e-25 119.8 86 73.3
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.8e-25 119.4 88 72.7
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 3.1e-25 118.6 86 72.1
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.2e-23 112.5 86 69.8
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.9e-23 112.1 86 67.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 2.9e-23 112.1 86 69.8
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 6.5e-23 110.9 88 69.3
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 6.5e-23 110.9 86 69.8
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 8.4e-23 110.5 86 69.8
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.9e-22 109.4 86 67.4
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 2.5e-22 109.0 86 72.1
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.2e-22 108.6 88 67.0
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 4.2e-22 108.2 86 68.6
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 7.2e-22 107.5 86 68.6
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 7.2e-22 107.5 86 66.3
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.3e-22 107.1 88 63.6
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 9.3e-22 107.1 87 69.0
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.6e-21 106.3 86 69.8
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 2.1e-21 105.9 86 67.4
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 2.7e-21 105.5 63 85.7
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.7e-21 105.5 70 77.1
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.7e-21 105.5 86 66.3
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 3.5e-21 105.1 89 67.4
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.6e-21 104.8 70 75.7
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.6e-21 104.8 70 75.7
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 4.6e-21 104.8 70 75.7
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 4.6e-21 104.8 101 61.4
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 6.1e-21 104.4 76 69.7
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 7.9e-21 104.0 86 67.4
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.0e-20 103.6 78 69.2
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.8e-20 102.8 89 66.3
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.3e-20 102.4 90 62.2
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 2.3e-20 102.4 69 73.9
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 2.3e-20 102.4 91 62.6
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 2.3e-20 102.4 93 62.4
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 3.0e-20 102.1 87 64.4
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.0e-20 102.1 88 62.5
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 3.0e-20 102.1 94 61.7
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.9e-20 101.7 84 63.1
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.9e-20 101.7 84 63.1
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 3.9e-20 101.7 68 76.5
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 3.9e-20 101.7 89 64.0
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 3.9e-20 101.7 72 72.2
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 3.9e-20 101.7 72 72.2
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 3.9e-20 101.7 85 64.7
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 5.1e-20 101.3 90 63.3
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 5.1e-20 101.3 88 62.5
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 6.7e-20 100.9 60 83.3
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.5e-19 99.8 89 61.8
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.5e-19 99.8 86 62.8
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.5e-19 99.8 88 62.5
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.9e-19 99.4 88 64.8
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.9e-19 99.4 86 60.5
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.9e-19 99.4 87 63.2
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.5e-19 99.0 86 62.8
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 3.3e-19 98.6 77 70.1
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 3.3e-19 98.6 86 64.0
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 4.3e-19 98.2 83 63.9
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.3e-19 98.2 83 65.1
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 4.3e-19 98.2 78 67.9
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 5.7e-19 97.8 86 60.5
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 5.7e-19 97.8 86 64.0
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 5.7e-19 97.8 59 78.0
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 5.7e-19 97.8 59 78.0
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 5.7e-19 97.8 88 58.0
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 5.7e-19 97.8 89 58.4
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 7.4e-19 97.4 60 80.0
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 7.4e-19 97.4 60 80.0
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 9.7e-19 97.1 88 60.2
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.7e-19 97.1 85 62.4
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 9.7e-19 97.1 62 77.4
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.3e-18 96.7 87 63.2
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.6e-18 96.3 86 61.6
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.6e-18 96.3 85 62.4
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.2e-18 95.9 88 60.2
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 2.2e-18 95.9 88 60.2
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.8e-18 95.5 86 61.6
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 2.8e-18 95.5 86 61.6
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.7e-18 95.1 88 59.1
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.7e-18 95.1 85 61.2
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.8e-18 94.7 64 73.4
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.3e-18 94.4 85 61.2
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 6.3e-18 94.4 92 57.6
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 8.2e-18 94.0 89 62.9
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 8.2e-18 94.0 88 62.5
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.1e-17 93.6 88 60.2
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.4e-17 93.2 91 58.2
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.4e-17 93.2 85 56.5
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.4e-17 93.2 87 59.8
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.8e-17 92.8 91 58.2
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.8e-17 92.8 91 57.1
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 1.8e-17 92.8 120 50.0
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.8e-17 92.8 88 55.7
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.8e-17 92.8 57 80.7
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 2.4e-17 92.4 88 58.0
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 3.1e-17 92.0 91 56.0
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 3.1e-17 92.0 87 58.6
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 5.3e-17 91.3 88 59.1
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 6.9e-17 90.9 93 53.8
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 9.0e-17 90.5 86 58.1
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 9.0e-17 90.5 87 57.5
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 9.0e-17 90.5 53 79.2
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 9.0e-17 90.5 56 75.0
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.2e-16 90.1 88 58.0
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.2e-16 90.1 88 59.1
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.2e-16 90.1 87 60.9
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.2e-16 90.1 87 57.5
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.2e-16 90.1 84 57.1
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.5e-16 89.7 69 66.7
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.0e-16 89.4 91 57.1
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 3.4e-16 88.6 89 55.1
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 4.5e-16 88.2 69 66.7
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 4.5e-16 88.2 85 57.6
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 4.5e-16 88.2 68 67.6
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 4.5e-16 88.2 53 75.5
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 5.9e-16 87.8 92 55.4
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 5.9e-16 87.8 67 67.2
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 7.7e-16 87.4 74 62.2
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 7.7e-16 87.4 60 75.0
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.0e-15 87.0 81 59.3
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.3e-15 86.7 68 64.7
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 3.8e-15 85.1 60 73.3
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 6.5e-15 84.3 51 82.4
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 8.5e-15 84.0 84 54.8
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.4e-14 83.2 60 71.7
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.9e-14 82.8 60 71.7
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.2e-14 82.0 60 68.3
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.2e-14 82.0 88 53.4
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.5e-14 81.3 87 54.0
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 6.1e-13 77.8 68 57.4
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.3e-12 75.9 56 66.1
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 2.3e-12 75.9 62 61.3
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.1e-11 73.6 77 53.2
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 3.3e-11 72.0 56 62.5
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 4.3e-11 71.6 56 62.5
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 7.4e-11 70.9 52 67.3
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.2e-10 69.3 55 63.6
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.2e-10 67.4 50 72.0
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 8.2e-10 67.4 64 57.8
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.5e-08 63.2 65 56.9
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.0e-08 62.8 79 54.4
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 2.2e-07 59.3 43 60.5
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 2.2e-07 59.3 43 60.5
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.2e-07 59.3 40 67.5
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 5.5e-06 54.7 63 46.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 9.4e-06 53.9 35 74.3


User provided reference genes

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