Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 4.8e-288 993.8 501 100.0
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.7e-181 639.8 505 65.3
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 7.3e-172 607.8 502 62.5
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.7e-168 596.7 503 62.0
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 7.1e-167 591.3 494 61.9
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 2.7e-166 589.3 497 61.0
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.8e-165 586.6 495 60.0
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.7e-165 584.7 496 62.5
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 5.6e-164 581.6 500 60.0
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 9.6e-164 580.9 498 59.2
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.1e-163 579.7 502 60.2
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 2.1e-163 579.7 494 62.6
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.8e-163 579.3 496 61.9
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 2.8e-163 579.3 497 60.2
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 3.7e-163 578.9 496 62.9
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 4.8e-163 578.6 496 61.7
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 5.3e-162 575.1 489 60.1
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 9.0e-162 574.3 494 59.3
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.5e-161 573.5 500 59.4
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 1.3e-160 570.5 508 58.7
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.7e-160 570.1 500 59.0
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 2.2e-160 569.7 505 58.2
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 2.9e-160 569.3 491 60.3
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 3.8e-160 568.9 502 58.6
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 1.1e-159 567.4 495 59.4
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.2e-158 563.9 501 57.9
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.2e-158 563.9 501 57.9
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.2e-158 563.9 499 59.1
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.2e-158 563.9 508 57.7
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.1e-158 563.1 496 58.7
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 2.1e-158 563.1 504 58.1
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 3.5e-158 562.4 494 58.7
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.5e-158 562.4 499 59.3
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 6.0e-158 561.6 513 57.9
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 7.9e-158 561.2 508 57.9
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.8e-157 560.1 495 59.4
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.8e-157 560.1 504 57.7
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 3.0e-157 559.3 507 59.0
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 3.0e-157 559.3 505 57.6
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 3.0e-157 559.3 508 57.1
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 6.7e-157 558.1 496 59.9
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.1e-156 557.4 501 58.1
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.5e-156 557.0 500 58.4
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.9e-156 556.6 505 57.2
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 2.5e-156 556.2 494 58.7
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 7.4e-156 554.7 493 58.8
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 9.6e-156 554.3 505 57.4
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.3e-155 553.9 505 57.4
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 2.1e-155 553.1 503 58.1
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 2.8e-155 552.7 499 59.3
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 4.8e-155 552.0 504 57.1
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 4.0e-154 548.9 499 58.9
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 9.0e-154 547.7 499 56.9
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.2e-153 547.4 506 57.7
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.0e-153 546.6 510 56.7
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.0e-153 546.6 510 56.7
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 3.4e-153 545.8 504 57.3
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 3.4e-153 545.8 565 55.8
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 5.8e-153 545.0 509 58.0
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 2.2e-152 543.1 497 57.5
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.9e-152 542.7 543 54.7
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 6.5e-152 541.6 490 58.8
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 4.2e-151 538.9 490 59.2
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.1e-151 538.1 496 56.2
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 9.3e-151 537.7 501 58.7
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 9.3e-151 537.7 503 58.3
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.6e-150 537.0 489 57.7
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 8.7e-149 531.2 440 62.0
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.6e-147 526.9 495 57.2
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 8.2e-147 524.6 499 57.5
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.4e-146 523.9 495 57.0
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.4e-146 523.1 515 56.1
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 3.6e-142 509.2 491 55.0
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.1e-141 505.4 471 56.3
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.3e-140 502.7 445 57.8
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 3.3e-140 502.7 491 54.2
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 4.3e-140 502.3 500 54.4
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 2.2e-139 500.0 447 56.4
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 8.2e-139 498.0 434 58.5
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 2.4e-138 496.5 492 55.1
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 9.1e-138 494.6 495 54.9
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 7.9e-134 481.5 443 58.5
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 5.1e-133 478.8 514 52.9
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 5.1e-133 478.8 442 57.2
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 6.7e-133 478.4 454 55.9
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.4e-132 475.7 475 54.5
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.4e-130 469.9 426 59.4
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 5.0e-128 462.2 494 50.8
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 8.5e-128 461.5 399 59.6
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 5.5e-127 458.8 486 52.5
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 2.8e-123 446.4 380 59.2
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 3.5e-121 439.5 489 49.5
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 5.0e-120 435.6 469 52.7
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 8.0e-118 428.3 401 58.6
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 2.5e-111 406.8 500 48.2
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.8e-109 400.6 394 55.3
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 1.2e-108 397.9 350 58.6
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.4e-106 389.0 358 57.0
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 7.0e-106 388.7 388 53.1
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-105 387.9 342 59.6
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.6e-104 381.7 499 46.1
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 1.6e-102 377.5 500 43.4
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 1.8e-101 374.0 509 41.7
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 2.0e-100 370.5 334 56.6
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 3.4e-100 369.8 352 54.5
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 1.7e-99 367.5 494 47.4
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 2.9e-96 356.7 435 48.5
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 7.3e-95 352.1 340 55.0
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 1.2e-94 351.3 586 40.6
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.0e-92 344.0 258 68.6
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 8.3e-91 338.6 345 54.2
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.2e-89 334.7 398 47.7
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 2.3e-88 330.5 288 58.7
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 2.5e-87 327.0 492 39.8
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 2.7e-81 307.0 243 65.8
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.0e-80 305.1 232 67.7
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.7e-80 304.3 298 53.0
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.0e-80 303.5 276 59.1
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-79 301.6 381 50.1
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.1e-79 301.6 373 44.0
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 6.8e-77 292.4 248 60.1
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-74 284.3 249 58.2
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-73 281.2 366 44.5
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 2.6e-68 263.8 584 36.5
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 5.3e-61 239.6 219 57.1
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 2.6e-60 237.3 194 59.8
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 7.6e-60 235.7 175 69.1
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-56 224.9 160 65.6
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-55 221.5 368 39.1
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.3e-53 213.0 221 52.0
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 4.5e-52 209.9 419 36.5
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 4.9e-51 206.5 209 56.0
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 3.2e-50 203.8 509 32.8
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-48 198.0 273 45.8
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 5.1e-48 196.4 209 52.2
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 8.7e-48 195.7 104 98.1
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.1e-45 187.2 197 52.3
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 9.0e-45 185.7 204 50.0
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.0e-40 172.2 177 53.7
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 3.4e-36 157.1 160 53.1
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 1.4e-34 151.8 444 30.4
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 7.1e-34 149.4 145 55.2
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.4e-29 135.2 614 26.1
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.1e-26 125.6 126 58.7
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-26 124.8 133 53.4
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 3.2e-26 124.0 117 56.4
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 3.6e-25 120.6 133 51.9
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 6.3e-22 109.8 94 61.7
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 8.2e-22 109.4 152 38.8
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-19 101.3 64 82.8
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-18 98.2 78 52.6
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 9.4e-18 95.9 85 58.8
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 7.9e-17 92.8 205 35.1
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-14 85.1 84 52.4
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-14 84.3 124 41.9
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-13 82.0 81 54.3
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.4e-13 81.3 78 55.1
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.6e-12 77.8 97 50.5
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 5.9e-12 76.6 83 45.8
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 7.7e-12 76.3 54 64.8
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 4.2e-10 70.5 101 44.6
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 6.3e-06 56.6 38 65.8


User provided reference genes

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