Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.9e-223 778.9 389 100.0
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 4.0e-149 531.9 337 78.9
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 6.8e-149 531.2 382 71.5
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.2e-145 520.4 382 70.4
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.3e-144 516.2 405 67.4
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 1.9e-143 513.1 406 66.3
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 1.9e-143 513.1 404 66.1
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 2.5e-143 512.7 406 66.0
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.2e-142 510.4 377 70.6
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 6.1e-142 508.1 380 68.2
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.0e-141 507.3 387 67.7
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.4e-141 506.9 349 72.8
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 3.1e-141 505.8 336 75.0
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 3.1e-141 505.8 338 74.6
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.2e-140 503.8 356 70.2
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.2e-140 503.8 355 70.7
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 1.2e-140 503.8 366 68.0
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 1.5e-140 503.4 354 70.6
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 2.0e-140 503.1 356 69.9
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 2.0e-140 503.1 379 67.5
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 4.4e-140 501.9 404 67.3
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 4.4e-140 501.9 368 69.6
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 7.5e-140 501.1 359 72.4
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 7.5e-140 501.1 359 72.4
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 9.8e-140 500.7 389 65.6
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 9.8e-140 500.7 385 68.1
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.3e-139 500.4 351 72.1
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.7e-139 500.0 397 66.5
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 4.9e-139 498.4 398 65.6
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 6.4e-139 498.0 350 70.3
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 6.4e-139 498.0 336 74.1
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 8.3e-139 497.7 340 73.2
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 8.3e-139 497.7 387 66.7
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.1e-138 497.3 339 71.4
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 1.4e-138 496.9 385 67.5
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 3.2e-138 495.7 403 66.0
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 5.4e-138 495.0 342 72.5
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 5.4e-138 495.0 336 73.8
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 5.4e-138 495.0 346 72.5
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 7.0e-138 494.6 339 72.9
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 1.2e-137 493.8 390 67.2
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 1.6e-137 493.4 386 68.1
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 2.0e-137 493.0 333 72.1
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 2.7e-137 492.7 337 74.2
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.5e-137 492.3 409 64.5
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 3.5e-137 492.3 356 69.7
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 3.5e-137 492.3 350 71.1
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.8e-137 491.1 385 67.0
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 1.7e-136 490.0 396 65.7
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 1.7e-136 490.0 407 64.4
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 3.0e-136 489.2 291 81.4
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 3.0e-136 489.2 337 73.9
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 5.0e-136 488.4 362 68.5
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 5.0e-136 488.4 373 68.6
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 2.5e-135 486.1 347 70.3
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.6e-134 483.4 397 64.0
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 1.6e-134 483.4 393 66.9
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 6.2e-134 481.5 371 67.7
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 5.2e-133 478.4 333 70.3
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 6.8e-133 478.0 333 71.8
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 8.9e-133 477.6 332 72.6
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 7.5e-132 474.6 373 66.8
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 7.1e-130 468.0 395 62.3
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.6e-129 466.8 391 61.9
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 2.7e-129 466.1 373 63.5
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 2.7e-129 466.1 394 64.7
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 4.6e-129 465.3 373 63.5
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 6.0e-129 464.9 375 64.0
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 6.0e-129 464.9 375 64.0
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 1.0e-128 464.2 348 66.1
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 1.3e-128 463.8 330 70.3
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 3.0e-128 462.6 378 63.0
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 5.6e-127 458.4 373 63.3
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 7.3e-127 458.0 348 66.1
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 2.1e-126 456.4 374 62.0
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 3.6e-126 455.7 359 65.2
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 6.2e-126 454.9 351 64.4
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 6.8e-125 451.4 378 60.1
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 2.6e-124 449.5 454 55.5
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 3.4e-124 449.1 339 66.7
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.4e-124 448.7 378 59.8
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 5.8e-124 448.4 355 63.9
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 2.2e-123 446.4 517 50.7
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 8.3e-123 444.5 379 58.6
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 1.1e-122 444.1 383 59.3
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 5.4e-122 441.8 384 60.7
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 1.2e-121 440.7 358 62.8
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 3.5e-121 439.1 358 62.6
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 3.5e-121 439.1 347 64.6
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 7.8e-121 438.0 358 62.3
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 7.8e-121 438.0 358 62.3
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 1.3e-120 437.2 378 60.6
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.7e-120 436.8 336 64.6
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 2.5e-119 433.0 381 59.8
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 5.6e-119 431.8 340 66.2
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 1.2e-116 424.1 336 66.1
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 7.6e-116 421.4 341 64.8
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 3.0e-112 409.5 397 55.9
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 5.6e-111 405.2 305 70.5
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.3e-110 404.1 395 55.2
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 1.6e-110 403.7 388 58.0
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 6.9e-109 398.3 272 68.8
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.3e-107 394.0 295 68.5
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 8.4e-107 391.3 307 65.1
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 2.3e-104 383.3 217 84.8
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 5.1e-104 382.1 215 84.7
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 6.2e-102 375.2 269 67.7
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 6.2e-102 375.2 239 76.6
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.7e-99 367.1 345 57.4
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 1.0e-96 357.8 288 64.6
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 1.5e-95 354.0 307 62.5
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 3.3e-95 352.8 261 65.1
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 5.3e-93 345.5 568 40.3
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 5.1e-88 328.9 199 77.9
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 9.0e-85 318.2 332 57.5
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.7e-83 313.9 217 68.2
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 1.1e-82 311.2 236 68.6
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.5e-82 308.9 216 70.4
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 2.3e-80 303.5 294 59.9
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.0e-80 303.1 265 57.7
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 3.0e-80 303.1 232 69.4
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 6.9e-77 292.0 245 60.8
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 4.1e-61 239.6 241 57.7
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 8.5e-43 178.7 239 42.3
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.5e-39 167.9 247 37.2
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 3.7e-30 136.7 287 31.7
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 4.3e-26 123.2 207 43.5
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 9.5e-26 122.1 130 52.3
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 8.0e-25 119.0 246 35.0
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 6.0e-20 102.8 88 62.5
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.5e-18 97.4 64 68.8
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 3.3e-18 97.1 64 68.8
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 4.3e-18 96.7 64 70.3
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-17 95.1 64 68.8
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-17 95.1 64 68.8
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.7e-17 93.2 71 62.0
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.1e-17 92.4 64 64.1
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.1e-17 92.4 64 64.1
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 2.3e-16 90.9 64 62.5
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.1e-16 90.5 64 62.5
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 6.8e-16 89.4 134 40.3
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 1.2e-15 88.6 263 28.9
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 2.1e-12 77.8 49 79.6
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 2.7e-12 77.4 235 26.0
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 7.8e-12 75.9 166 31.3
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 3.3e-10 70.5 156 35.3
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 4.7e-09 66.6 168 31.0
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 1.3e-06 58.5 174 31.6


User provided reference genes

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