Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 1.0e-164 583.9 455 100.0
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 4.3e-62 243.0 455 44.4
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.3e-34 151.8 426 34.7
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.7e-34 151.4 427 34.9
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 2.7e-32 144.1 486 30.0
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 8.8e-31 139.0 117 59.8
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.3e-30 137.1 492 30.3
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 7.4e-30 136.0 120 58.3
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 9.7e-30 135.6 406 33.5
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 1.8e-28 131.3 163 47.2
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 1.8e-28 131.3 165 50.3
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 2.4e-28 131.0 497 30.8
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 4.1e-28 130.2 135 58.5
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 4.2e-25 120.2 115 53.9
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 4.2e-25 120.2 202 37.1
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 1.2e-24 118.6 205 42.9
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 2.3e-23 114.4 154 51.3
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 3.9e-23 113.6 167 42.5
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 6.7e-23 112.8 190 39.5
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 6.7e-23 112.8 147 44.9
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 8.8e-23 112.5 138 44.9
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 3.3e-22 110.5 140 44.3
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 2.2e-21 107.8 115 52.2
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 3.7e-21 107.1 148 42.6
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 1.4e-20 105.1 150 47.3
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 4.1e-20 103.6 192 42.7
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 5.3e-20 103.2 140 46.4
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 5.3e-20 103.2 140 46.4
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 7.0e-20 102.8 146 46.6
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 1.2e-19 102.1 433 27.5
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 1.6e-19 101.7 134 46.3
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 2.0e-19 101.3 112 59.8
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 3.5e-19 100.5 158 42.4
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 4.5e-19 100.1 152 43.4
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 7.7e-19 99.4 154 39.0
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 7.7e-19 99.4 436 26.6
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 1.0e-18 99.0 106 47.2
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 1.3e-18 98.6 124 53.2
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 1.3e-18 98.6 117 57.3
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.7e-18 98.2 149 40.9
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 2.2e-18 97.8 119 46.2
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 5.0e-18 96.7 114 55.3
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 6.5e-18 96.3 149 40.3
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 8.5e-18 95.9 148 43.2
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 5.5e-17 93.2 133 52.6
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 1.2e-16 92.0 113 48.7
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 1.6e-16 91.7 160 40.6
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 2.1e-16 91.3 154 40.9
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 3.6e-16 90.5 137 40.1
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 3.6e-16 90.5 175 35.4
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 1.0e-15 89.0 103 54.4
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 3.0e-15 87.4 102 43.1
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 2.6e-14 84.3 129 43.4
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 7.5e-14 82.8 151 44.4
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 1.7e-13 81.6 46 78.3
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 1.7e-13 81.6 88 62.5
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 6.3e-13 79.7 88 47.7
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 1.8e-12 78.2 151 39.7
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 1.2e-11 75.5 136 41.2
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 2.0e-11 74.7 57 64.9
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 3.5e-11 73.9 115 48.7
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 4.5e-11 73.6 61 67.2
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 1.3e-10 72.0 106 42.5
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 1.7e-10 71.6 130 43.8
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 5.0e-10 70.1 34 79.4
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 8.5e-10 69.3 152 32.9
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 8.5e-10 69.3 110 46.4
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 4.2e-09 67.0 32 81.2
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 4.2e-09 67.0 32 81.2
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 7.2e-09 66.2 55 60.0
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 9.4e-09 65.9 120 36.7
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 1.2e-08 65.5 99 38.4
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 1.6e-08 65.1 106 41.5
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 2.7e-08 64.3 106 50.9
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 6.1e-08 63.2 35 68.6
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 8.0e-08 62.8 33 72.7
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.0e-07 62.4 55 56.4
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 1.8e-07 61.6 32 71.9
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 2.3e-07 61.2 55 56.4
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 4.0e-07 60.5 53 58.5
TWI79G0443 Tripterygium wilfordii HOM05D002710 ORTHO05D002905 4.0e-07 60.5 113 37.2
Migut.B00639 Erythranthe guttata HOM05D007421 ORTHO05D009203 5.2e-07 60.1 54 53.7
EL10Ac2g04521 Beta vulgaris HOM05D002710 ORTHO05D002905 1.2e-06 58.9 35 62.9
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 1.2e-06 58.9 55 52.7
Prupe.4G263300 Prunus persica HOM05D007421 ORTHO05D009203 1.5e-06 58.5 87 40.2
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 2.0e-06 58.2 55 54.5
MD16G1035800 Malus domestica HOM05D002710 ORTHO05D002905 2.6e-06 57.8 160 28.8
PRCOL_00004796 Prasinoderma coloniale HOM05D002710 ORTHO05D002905 2.6e-06 57.8 31 74.2
CDE10G1145 Ceratophyllum demersum HOM05D000286 ORTHO05D002905 4.4e-06 57.0 50 44.0
Sc11g0008490 Simmondsia chinensis HOM05D002710 ORTHO05D002905 4.4e-06 57.0 32 68.8
CBR_g24084 Chara braunii HOM05D002710 ORTHO05D002905 5.7e-06 56.6 32 68.8
AUR62023217 Chenopodium quinoa HOM05D002710 ORTHO05D002905 5.7e-06 56.6 35 60.0
AUR62044613 Chenopodium quinoa HOM05D002710 ORTHO05D002905 5.7e-06 56.6 35 60.0
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 5.7e-06 56.6 55 58.2
Oeu041982.1 Olea europaea HOM05D002710 ORTHO05D002905 5.7e-06 56.6 46 50.0
Cfa015825 Carpinus fangiana HOM05D002710 ORTHO05D002905 7.5e-06 56.2 35 57.1
CiPaw.05G243800 Carya illinoinensis HOM05D002710 ORTHO05D002905 7.5e-06 56.2 35 60.0
Haze_00668 Corylus avellana HOM05D002710 ORTHO05D002905 7.5e-06 56.2 35 57.1
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 7.5e-06 56.2 211 30.3
Gohir.A12G055200 Gossypium hirsutum HOM05D002710 ORTHO05D002905 9.8e-06 55.8 46 52.2
Manes.14G108300 Manihot esculenta HOM05D002710 ORTHO05D002905 9.8e-06 55.8 35 60.0
QL01p003296 Quercus lobata HOM05D002710 ORTHO05D002905 9.8e-06 55.8 35 60.0
QL01p003323 Quercus lobata HOM05D002710 ORTHO05D002905 9.8e-06 55.8 35 60.0
QL01p003332 Quercus lobata HOM05D002710 ORTHO05D002905 9.8e-06 55.8 35 60.0
GSVIVG01011819001 Vitis vinifera HOM05D002710 ORTHO05D002905 9.8e-06 55.8 35 60.0


User provided reference genes

Program Settings