Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 4.6e-35 150.6 72 100.0
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 3.9e-26 120.9 68 85.3
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 6.7e-26 120.2 73 79.5
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 8.7e-26 119.8 73 78.1
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 1.5e-25 119.0 72 75.0
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 2.5e-25 118.2 72 76.4
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 3.3e-25 117.9 72 73.6
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 3.3e-25 117.9 72 79.2
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 3.3e-25 117.9 72 76.4
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 5.7e-25 117.1 72 77.8
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 7.4e-25 116.7 65 81.5
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 1.3e-24 115.9 66 83.3
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.6e-24 115.5 72 76.4
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 2.1e-24 115.2 73 75.3
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 2.1e-24 115.2 70 78.6
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 2.8e-24 114.8 72 76.4
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 3.7e-24 114.4 61 83.6
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 8.2e-24 113.2 72 73.6
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 8.2e-24 113.2 61 82.0
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.1e-23 112.8 69 72.5
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.1e-23 112.8 60 81.7
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 1.1e-23 112.8 72 73.6
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 1.1e-23 112.8 72 73.6
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 1.4e-23 112.5 75 73.3
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 1.4e-23 112.5 72 73.6
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.8e-23 112.1 67 77.6
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 2.4e-23 111.7 69 73.9
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 4.0e-23 110.9 68 70.6
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 5.3e-23 110.5 61 82.0
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 6.9e-23 110.2 69 73.9
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 6.9e-23 110.2 76 72.4
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.9e-23 110.2 72 69.4
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 1.2e-22 109.4 73 72.6
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 1.2e-22 109.4 74 68.9
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.2e-22 109.4 60 81.7
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 2.0e-22 108.6 62 82.3
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 2.0e-22 108.6 71 71.8
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 3.4e-22 107.8 74 73.0
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 3.4e-22 107.8 74 73.0
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 3.4e-22 107.8 74 73.0
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 1.3e-21 105.9 72 72.2
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 2.9e-21 104.8 60 78.3
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 3.8e-21 104.4 68 69.1
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 5.0e-21 104.0 57 78.9
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 5.0e-21 104.0 57 78.9
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.1e-20 102.8 73 67.1
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.4e-20 102.4 68 70.6
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.4e-20 102.4 57 78.9
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 1.4e-20 102.4 57 78.9
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 2.5e-20 101.7 62 72.6
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 9.3e-20 99.8 69 69.6
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 1.2e-19 99.4 53 83.0
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 1.2e-19 99.4 61 72.1
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 2.1e-19 98.6 59 74.6
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 2.7e-19 98.2 58 77.6
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 4.6e-19 97.4 71 64.8
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 6.1e-19 97.1 51 80.4
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 6.1e-19 97.1 55 76.4
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 7.9e-19 96.7 60 70.0
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 1.0e-18 96.3 70 62.9
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.0e-18 96.3 71 63.4
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.3e-18 95.9 54 77.8
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.3e-18 95.9 73 63.0
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 2.3e-18 95.1 71 66.2
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 2.3e-18 95.1 71 66.2
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 2.3e-18 95.1 57 71.9
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 3.0e-18 94.7 73 61.6
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 3.0e-18 94.7 72 61.1
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.0e-18 94.7 54 77.8
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.9e-18 94.4 72 62.5
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 3.9e-18 94.4 63 68.3
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 3.9e-18 94.4 63 68.3
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 5.1e-18 94.0 72 62.5
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 5.1e-18 94.0 60 70.0
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 5.1e-18 94.0 72 61.1
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 6.7e-18 93.6 74 62.2
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 6.7e-18 93.6 67 67.2
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 8.7e-18 93.2 74 62.2
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 8.7e-18 93.2 74 62.2
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 8.7e-18 93.2 75 61.3
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 8.7e-18 93.2 63 68.3
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 8.7e-18 93.2 75 61.3
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 8.7e-18 93.2 63 68.3
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 8.7e-18 93.2 63 68.3
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 8.7e-18 93.2 75 61.3
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 8.7e-18 93.2 63 68.3
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 8.7e-18 93.2 63 68.3
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.7e-18 93.2 73 60.3
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 8.7e-18 93.2 47 87.2
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 8.7e-18 93.2 65 64.6
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.1e-17 92.8 60 68.3
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 1.5e-17 92.4 54 75.9
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.5e-17 92.4 63 66.7
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.9e-17 92.0 59 67.8
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 1.9e-17 92.0 62 67.7
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.9e-17 92.0 71 62.0
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 2.5e-17 91.7 62 66.1
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 3.3e-17 91.3 74 59.5
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 4.3e-17 90.9 59 69.5
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 4.3e-17 90.9 69 62.3
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 5.7e-17 90.5 66 63.6
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 5.7e-17 90.5 63 66.7
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 7.4e-17 90.1 71 60.6
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 7.4e-17 90.1 48 83.3
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 9.7e-17 89.7 66 63.6
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 1.3e-16 89.4 74 59.5
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 8.2e-16 86.7 46 82.6
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.4e-15 85.1 59 64.4
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 2.0e-14 82.0 47 72.3
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.4e-14 81.3 55 67.3
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 4.5e-14 80.9 58 63.8
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 1.7e-13 79.0 74 56.8
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 5.0e-13 77.4 48 66.7
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 1.4e-12 75.9 49 65.3
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 5.5e-12 73.9 54 61.1
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 7.2e-12 73.6 62 58.1
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 7.2e-12 73.6 58 55.2
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 5.1e-10 67.4 49 57.1
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 6.7e-10 67.0 37 78.4
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 2.0e-09 65.5 48 56.2
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 7.4e-09 63.5 55 50.9
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 2.8e-08 61.6 44 59.1
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 4.8e-08 60.8 39 66.7
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 4.1e-07 57.8 30 76.7
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 9.1e-07 56.6 40 60.0
Nn3g18517 Nelumbo nucifera HOM05D005857 ORTHO05D007193 1.2e-06 56.2 46 67.4
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 2.0e-06 55.5 58 44.8
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 2.0e-06 55.5 58 44.8
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 5.9e-06 53.9 53 45.3


User provided reference genes

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