Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 8.3e-105 384.0 240 100.0
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 4.0e-75 285.4 240 70.0
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 7.8e-55 218.0 239 55.6
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 8.1e-44 181.4 109 70.6
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.8e-43 180.3 124 65.3
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 4.0e-43 179.1 127 62.2
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 2.0e-42 176.8 126 63.5
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 2.6e-42 176.4 126 61.9
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 5.8e-42 175.3 127 64.6
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 5.8e-42 175.3 124 64.5
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 2.2e-41 173.3 127 59.8
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 2.9e-41 172.9 127 62.2
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 4.9e-41 172.2 128 57.8
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 4.9e-41 172.2 122 61.5
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 8.4e-41 171.4 127 59.1
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.1e-40 171.0 119 61.3
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.4e-40 170.6 119 61.3
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.9e-40 170.2 119 61.3
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.9e-40 170.2 122 59.8
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 2.4e-40 169.9 128 56.2
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 5.5e-40 168.7 122 63.9
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 7.1e-40 168.3 124 58.9
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 1.6e-39 167.2 127 60.6
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.6e-39 167.2 126 57.9
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 2.1e-39 166.8 109 63.3
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 7.9e-39 164.9 116 61.2
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 7.9e-39 164.9 128 58.6
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.3e-38 164.1 127 57.5
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 1.3e-38 164.1 128 53.9
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.8e-38 163.7 127 55.1
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.8e-38 163.7 127 55.1
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.8e-38 163.7 127 59.8
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.8e-38 163.7 126 59.5
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 3.0e-38 162.9 125 57.6
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 3.0e-38 162.9 109 63.3
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 3.0e-38 162.9 124 55.6
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 8.7e-38 161.4 127 58.3
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.1e-37 161.0 122 55.7
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 1.5e-37 160.6 116 61.2
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.9e-37 160.2 128 56.2
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.3e-36 157.5 127 55.9
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 1.3e-36 157.5 127 53.5
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.3e-36 157.5 126 59.5
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 1.3e-36 157.5 124 58.9
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.8e-36 156.4 124 57.3
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 3.7e-36 156.0 101 68.3
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 3.7e-36 156.0 124 58.1
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 3.7e-36 156.0 128 55.5
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.8e-36 155.6 93 71.0
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 8.2e-36 154.8 151 51.0
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.1e-35 154.5 120 58.3
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 1.4e-35 154.1 124 56.5
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 3.1e-35 152.9 109 57.8
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 4.0e-35 152.5 124 57.3
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 5.3e-35 152.1 124 52.4
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 2.0e-34 150.2 118 57.6
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 2.0e-34 150.2 123 53.7
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 2.0e-34 150.2 130 53.1
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 4.5e-34 149.1 125 55.2
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.3e-33 147.5 100 59.0
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.7e-33 147.1 93 68.8
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 3.8e-33 146.0 93 66.7
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 1.1e-32 144.4 101 60.4
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.4e-32 144.1 127 51.2
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 2.1e-31 140.2 123 48.8
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 2.1e-31 140.2 120 50.0
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.1e-31 140.2 131 45.8
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 2.1e-31 140.2 125 52.0
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 2.7e-31 139.8 107 52.3
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.7e-31 139.8 124 48.4
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 3.5e-31 139.4 116 55.2
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 4.6e-31 139.0 106 55.7
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.6e-31 139.0 92 65.2
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 6.0e-31 138.7 104 54.8
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 6.0e-31 138.7 113 53.1
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 7.9e-31 138.3 126 48.4
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 7.9e-31 138.3 127 48.8
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 7.9e-31 138.3 126 49.2
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.0e-30 137.9 128 48.4
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.3e-30 137.5 126 45.2
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 2.3e-30 136.7 127 48.0
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 2.3e-30 136.7 112 50.9
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.3e-30 136.7 126 48.4
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 3.9e-30 136.0 127 48.0
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 3.9e-30 136.0 127 48.0
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 3.9e-30 136.0 127 48.0
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 3.9e-30 136.0 127 48.0
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.1e-29 134.4 127 48.0
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.9e-29 133.7 112 54.5
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 5.7e-29 132.1 118 51.7
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 5.7e-29 132.1 100 54.0
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 5.7e-29 132.1 107 55.1
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 5.7e-29 132.1 91 63.7
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 7.4e-29 131.7 101 56.4
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 7.4e-29 131.7 107 56.1
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 9.7e-29 131.3 109 52.3
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.3e-28 131.0 128 46.1
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.6e-28 130.6 111 49.5
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 2.8e-28 129.8 107 53.3
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 2.8e-28 129.8 99 56.6
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 2.8e-28 129.8 126 46.0
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 4.8e-28 129.0 105 54.3
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 6.3e-28 128.6 99 54.5
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 8.2e-28 128.3 109 50.5
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.1e-27 127.9 126 46.8
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.4e-27 127.5 109 49.5
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.4e-27 127.5 108 50.9
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 1.4e-27 127.5 99 52.5
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.8e-27 127.1 99 53.5
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 4.1e-27 125.9 120 48.3
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 4.1e-27 125.9 96 54.2
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 6.9e-27 125.2 103 51.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 6.9e-27 125.2 103 50.5
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 9.0e-27 124.8 103 51.5
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 9.0e-27 124.8 109 48.6
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.2e-26 124.4 100 56.0
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.2e-26 124.4 100 56.0
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 1.5e-26 124.0 103 51.5
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 2.0e-26 123.6 98 53.1
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.0e-26 123.6 96 54.2
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.4e-26 122.9 110 49.1
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 4.5e-26 122.5 101 50.5
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 4.5e-26 122.5 103 51.5
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 7.6e-26 121.7 96 54.2
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.3e-25 120.9 101 51.5
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 1.3e-25 120.9 95 53.7
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.3e-25 120.9 101 49.5
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.3e-25 120.9 105 47.6
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.7e-25 120.6 98 52.0
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 2.2e-25 120.2 98 52.0
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.2e-25 120.2 98 52.0
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 2.9e-25 119.8 101 49.5
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 8.5e-25 118.2 96 51.0
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 2.5e-24 116.7 134 38.8
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.5e-24 116.7 98 50.0
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.5e-24 116.7 93 50.5
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.2e-23 114.4 90 53.3
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 4.6e-23 112.5 101 46.5
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 4.6e-23 112.5 122 40.2
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 6.1e-23 112.1 92 48.9
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 7.9e-23 111.7 98 48.0
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 7.9e-23 111.7 98 48.0
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 7.9e-23 111.7 98 48.0
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 7.9e-23 111.7 98 48.0
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 7.9e-23 111.7 105 56.2
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.3e-22 110.9 96 47.9
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.3e-22 110.9 88 54.5
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 1.3e-22 110.9 127 41.7
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.3e-22 110.9 77 63.6
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.8e-22 110.5 98 46.9
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 2.3e-22 110.2 125 39.2
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 3.0e-22 109.8 101 45.5
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 3.0e-22 109.8 98 46.9
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 4.3e-21 105.9 101 44.6
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.3e-20 104.4 101 43.6
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 2.2e-20 103.6 105 48.6
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 2.2e-20 103.6 97 49.5
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 2.8e-20 103.2 90 45.6
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.8e-20 103.2 82 53.7
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 2.8e-20 103.2 94 44.7
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 3.7e-20 102.8 94 45.7
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 3.7e-20 102.8 99 43.4
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 4.8e-20 102.4 94 44.7
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 6.3e-20 102.1 96 43.8
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 5.3e-19 99.0 96 47.9
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 6.9e-19 98.6 83 49.4
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.2e-18 97.8 90 50.0
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.5e-18 97.4 125 38.4
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.7e-17 94.0 94 41.5
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 2.9e-17 93.2 127 38.6
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 2.9e-17 93.2 66 60.6
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 8.5e-17 91.7 98 44.9
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 1.9e-16 90.5 97 41.2
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 5.1e-14 82.4 97 39.2
Oeu056372.1 Olea europaea HOM05D002444 ORTHO05D004748 5.7e-13 79.0 61 57.4
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.3e-12 77.8 74 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1126 Anthoceros agrestis HOM05D002444 ORTHO05D004748 5.9e-10 68.9 102 39.2
TPR.G32167 Trifolium pratense HOM05D002444 ORTHO05D004748 1.1e-08 64.7 38 63.2
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 2.5e-08 63.5 70 41.4
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 3.2e-08 63.2 89 43.8
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 3.2e-08 63.2 89 43.8
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 7.2e-08 62.0 89 37.1
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 7.2e-08 62.0 86 33.7
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 4.7e-07 59.3 117 32.5
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 3.0e-06 56.6 81 32.1
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 5.2e-06 55.8 72 36.1
CANSAT54G2708 Cannabis sativa HOM05D002444 ORTHO05D004748 6.7e-06 55.5 38 52.6


User provided reference genes

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