Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 4.2e-130 468.0 231 100.0
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 1.5e-71 273.5 164 77.4
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.0e-71 273.1 216 63.4
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 4.4e-71 271.9 193 66.8
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 4.4e-71 271.9 226 61.9
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 7.5e-71 271.2 230 59.6
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.3e-70 270.4 216 62.5
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 8.3e-70 267.7 207 62.3
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 8.3e-70 267.7 196 65.8
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 1.4e-69 266.9 227 59.5
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 1.4e-69 266.9 210 64.8
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 1.9e-69 266.5 191 67.0
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 1.9e-69 266.5 163 74.8
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 2.4e-69 266.2 190 66.8
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 2.4e-69 266.2 224 62.1
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 2.4e-69 266.2 202 63.9
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 3.2e-69 265.8 219 61.6
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 3.2e-69 265.8 202 63.9
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 4.1e-69 265.4 174 71.8
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 5.4e-69 265.0 231 59.3
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 5.4e-69 265.0 165 73.9
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 7.0e-69 264.6 190 63.7
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 9.2e-69 264.2 219 61.2
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 1.2e-68 263.8 232 59.9
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.2e-68 263.8 220 59.5
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 1.6e-68 263.5 165 72.7
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 1.6e-68 263.5 191 66.5
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 2.7e-68 262.7 240 56.7
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 2.7e-68 262.7 166 71.7
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 3.5e-68 262.3 236 55.9
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 3.5e-68 262.3 209 62.7
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 3.5e-68 262.3 240 56.2
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 3.5e-68 262.3 215 60.5
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 4.6e-68 261.9 164 72.6
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 7.8e-68 261.2 202 63.4
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 7.8e-68 261.2 202 63.4
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 1.0e-67 260.8 160 74.4
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 1.3e-67 260.4 197 62.9
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 1.3e-67 260.4 207 60.9
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 1.3e-67 260.4 226 60.2
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.3e-67 259.6 186 67.2
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 3.0e-67 259.2 240 55.8
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 3.0e-67 259.2 234 57.3
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 3.0e-67 259.2 166 71.1
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 5.0e-67 258.5 209 59.3
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 5.0e-67 258.5 212 59.4
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 1.5e-66 256.9 192 64.1
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 2.5e-66 256.1 210 59.5
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 2.5e-66 256.1 224 57.6
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 2.5e-66 256.1 220 58.6
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.3e-66 255.8 218 60.6
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 3.3e-66 255.8 162 70.4
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 4.3e-66 255.4 199 62.8
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 5.6e-66 255.0 210 58.6
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 7.3e-66 254.6 210 59.0
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 9.5e-66 254.2 174 67.8
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 1.2e-65 253.8 217 57.6
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 1.2e-65 253.8 235 54.0
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 2.1e-65 253.1 183 62.8
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 2.1e-65 253.1 165 70.3
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 6.2e-65 251.5 237 56.1
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.8e-64 250.0 210 56.7
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 3.1e-64 249.2 161 70.8
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 3.1e-64 249.2 163 68.1
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 6.8e-64 248.1 198 63.1
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 6.8e-64 248.1 198 63.1
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 6.8e-64 248.1 189 61.4
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 2.0e-63 246.5 220 56.8
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 2.6e-63 246.1 168 67.9
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 2.6e-63 246.1 165 67.9
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 4.4e-63 245.4 165 68.5
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 1.3e-62 243.8 161 68.9
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 2.2e-62 243.0 207 57.5
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 1.1e-61 240.7 170 64.1
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 1.4e-61 240.4 190 58.9
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 1.9e-61 240.0 208 58.2
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 3.2e-61 239.2 179 64.8
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 4.1e-61 238.8 189 61.4
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 5.4e-61 238.4 170 64.1
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 9.2e-61 237.7 170 63.5
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 9.2e-61 237.7 170 63.5
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 9.2e-61 237.7 170 63.5
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 2.7e-60 236.1 163 65.0
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 6.0e-60 235.0 163 66.3
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 7.8e-60 234.6 162 64.8
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 1.3e-59 233.8 162 64.2
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 1.7e-59 233.4 162 64.8
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 1.7e-59 233.4 162 64.8
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 3.0e-59 232.6 176 61.4
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 1.5e-58 230.3 225 55.1
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 3.3e-58 229.2 170 60.6
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 8.1e-57 224.6 182 59.9
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 3.4e-55 219.2 160 63.8
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 1.3e-54 217.2 175 58.9
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 7.1e-53 211.5 139 69.8
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 1.2e-52 210.7 174 56.9
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 2.1e-52 209.9 175 57.1
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 8.6e-51 204.5 126 76.2
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 1.1e-48 197.6 164 53.7
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 9.9e-47 191.0 144 61.8
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 1.2e-39 167.5 161 49.1
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 2.0e-39 166.8 173 46.2
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 9.9e-39 164.5 167 52.7
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 9.9e-39 164.5 176 50.6
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 9.9e-39 164.5 112 67.9
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 2.2e-38 163.3 158 55.7
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 1.9e-37 160.2 173 46.2
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 3.2e-37 159.5 140 57.9
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 2.7e-36 156.4 111 65.8
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 1.5e-34 150.6 90 76.7
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 3.6e-33 146.0 111 63.1
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 6.2e-33 145.2 122 56.6
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 3.7e-25 119.4 123 48.8
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 3.8e-22 109.4 158 40.5
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 5.5e-21 105.5 206 30.1
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 1.2e-20 104.4 164 37.8
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 6.0e-20 102.1 54 81.5
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 6.9e-16 88.6 53 71.7
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.2e-15 87.8 56 67.9
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 4.9e-14 82.4 55 65.5
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 4.9e-14 82.4 55 65.5
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 9.3e-13 78.2 68 52.9
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.8e-08 63.9 38 73.7


User provided reference genes

Program Settings