Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 2051.2 1034 100.0
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1717.2 1082 80.8
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1084 77.0
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1631.7 1078 76.3
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 1079 75.4
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1606.7 1059 75.3
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1076 75.7
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1603.2 1068 75.4
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1601.3 1070 75.7
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1598.6 1083 74.7
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1596.3 1065 75.5
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1595.9 1065 75.4
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1592.8 1065 75.4
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1591.2 1061 75.7
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1588.2 1051 75.5
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1586.6 1011 77.3
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1584.3 1061 75.2
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 1081 74.2
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1583.5 1100 73.5
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 1066 74.4
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 1005 77.8
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 1071 73.6
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1578.5 1073 74.5
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1578.1 1033 75.6
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1576.6 1061 74.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1575.8 1071 74.6
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1575.5 1032 75.8
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1574.7 1075 74.1
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1573.5 1075 74.0
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1570.8 1075 73.8
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1569.3 1058 74.8
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1565.8 1064 74.3
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1564.7 1009 76.4
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1564.7 1100 72.8
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1562.0 1004 76.4
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1559.7 1072 73.7
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1558.9 1068 73.9
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1558.9 1049 73.9
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1558.9 1075 73.3
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1558.1 1076 73.6
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1558.1 1063 73.0
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1558.1 1073 73.5
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1554.7 1067 74.4
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1553.1 1043 74.6
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1550.8 982 77.8
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1546.9 1098 72.0
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1546.2 982 77.5
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1545.4 1082 72.6
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1543.5 1107 71.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1541.6 1083 72.3
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1539.2 1057 72.7
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1538.9 1068 72.1
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1538.5 1119 70.6
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1538.5 1071 72.8
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1538.5 1067 73.1
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1538.1 1058 73.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1538.1 1056 72.9
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1536.5 1080 71.6
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1536.2 1009 74.9
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1535.8 1057 71.8
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1533.5 1073 72.4
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1528.1 1075 72.4
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1523.5 1057 71.3
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1522.7 1050 72.7
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1520.8 1056 71.6
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1520.8 1076 71.3
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1520.0 1052 71.7
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1520.0 1057 71.1
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1519.2 1052 71.6
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1518.4 1082 70.1
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1518.4 1084 70.1
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1517.7 1058 71.2
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1517.3 1052 71.4
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1517.3 1065 70.6
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1517.3 1053 71.4
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1516.9 1052 71.4
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1514.6 1174 67.5
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1513.4 1047 71.4
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1513.0 1056 71.4
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1512.7 1055 71.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1509.2 1042 71.8
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1508.0 1070 70.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1506.1 1027 72.6
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1505.3 1006 74.5
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1504.2 1056 70.8
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1502.6 1067 70.2
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1500.0 1056 71.2
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1493.0 1060 70.8
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1492.2 1166 67.0
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1489.6 1195 65.4
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1488.8 1057 70.5
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1488.4 1049 70.9
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1488.0 1012 72.6
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1486.1 1055 70.5
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1485.7 1117 67.2
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1485.3 1070 69.9
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1483.8 1055 70.3
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1481.8 1060 69.9
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1481.5 1078 69.5
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1481.5 1061 69.9
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1476.5 1064 70.8
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1471.4 1056 70.0
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1470.7 1061 69.7
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1445.3 1114 66.8
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1441.0 1112 67.0
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1395.9 1007 70.7
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1392.5 869 79.3
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1382.5 969 70.9
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1369.8 1085 65.3
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1359.7 914 73.5
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1347.8 1079 65.5
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1337.4 1011 64.0
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1320.8 1024 63.0
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1272.7 799 77.8
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1266.5 739 88.4
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1251.9 957 63.8
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1231.1 989 62.3
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1229.5 1082 61.6
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1229.2 1082 61.6
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1151.7 1058 56.8
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1150.6 748 76.2
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1129.4 816 70.2
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 7.1e-312 1074.7 716 73.0
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 2.2e-303 1045.8 719 73.6
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 4.7e-298 1028.1 989 51.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 8.9e-297 1023.8 1027 50.9
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 7.8e-293 1010.7 983 52.1
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 3.8e-263 912.1 881 54.9
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.6e-260 901.4 774 57.5
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.2e-255 886.3 596 74.7
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 6.0e-245 851.7 874 54.6
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 2.1e-229 800.0 579 68.2
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.5e-222 776.5 972 42.4
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 8.2e-210 734.9 671 55.1
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.0e-208 730.3 644 59.5
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.4e-201 706.8 642 57.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.4e-172 611.3 524 62.8
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.3e-170 604.7 436 72.2
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.6e-165 586.6 408 70.8
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 6.8e-156 555.8 347 79.5
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.6e-149 534.6 393 65.6
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 4.0e-148 530.0 374 70.9
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.8e-140 504.6 485 57.7
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 6.9e-132 476.1 393 62.6
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.8e-127 461.5 470 56.8
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 8.7e-127 459.1 1034 32.9
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.1e-126 458.8 309 71.2
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.1e-125 454.5 327 66.7
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.3e-106 392.1 401 55.6
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 3.9e-103 380.6 992 29.7
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.0e-98 365.9 967 28.7
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.7e-98 365.2 227 78.4
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 2.0e-94 351.7 973 28.0
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 2.0e-83 315.1 247 70.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.9e-83 313.5 915 28.4
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.3e-58 232.6 154 73.4
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 5.6e-57 227.3 222 53.6
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 7.3e-57 226.9 851 23.7
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 5.8e-54 217.2 332 37.0
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 2.3e-47 195.3 310 41.9
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 3.7e-45 188.0 124 76.6
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 2.1e-40 172.2 220 49.1
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.6e-40 171.4 146 58.9
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 6.2e-40 170.6 141 60.3
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 8.9e-39 166.8 144 59.7
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 3.6e-32 144.8 148 52.0
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 6.2e-32 144.1 269 35.3
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 4.0e-31 141.4 134 56.7
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.4e-28 132.9 173 39.9
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 7.1e-28 130.6 150 56.7
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 2.7e-27 128.6 465 25.4
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 5.6e-25 120.9 111 52.3
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 2.2e-21 109.0 110 55.5
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 8.4e-21 107.1 287 25.8
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.1e-16 92.4 425 22.8
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.4e-15 89.0 83 56.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.9e-12 79.3 56 66.1
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 1.6e-11 76.3 128 41.4
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.3e-10 72.4 51 62.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 6.7e-10 70.9 43 79.1
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 3.3e-09 68.6 163 39.3
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 6.2e-08 64.3 36 80.6
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 4.5e-06 58.2 77 44.2


User provided reference genes

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