Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001522 Daucus carota HOM05D001966 ORTHO05D007227 4.8e-51 204.1 99 100.0
Cfa023004 Carpinus fangiana HOM05D001966 ORTHO05D007227 3.0e-45 184.9 99 91.9
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 8.8e-45 183.3 98 90.8
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 2.2e-43 178.7 99 88.9
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 8.3e-43 176.8 101 88.1
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 9.1e-42 173.3 98 85.7
HPP92_028385 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.0e-41 172.2 99 83.8
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 2.7e-41 171.8 100 85.0
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 1.7e-40 169.1 99 85.9
arahy.Tifrunner.gnm1.ann1.77ZW6W Arachis hypogaea HOM05D001966 ORTHO05D007227 2.3e-40 168.7 98 85.7
arahy.Tifrunner.gnm1.ann1.EGZ6K4 Arachis hypogaea HOM05D001966 ORTHO05D007227 2.3e-40 168.7 98 85.7
arahy.Tifrunner.gnm1.ann1.KZKE62 Arachis hypogaea HOM05D001966 ORTHO05D007227 2.3e-40 168.7 98 85.7
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 5.0e-40 167.5 99 84.8
Medtr3g035620 Medicago truncatula HOM05D001966 ORTHO05D007227 5.0e-40 167.5 99 84.8
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 1.9e-39 165.6 99 83.8
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.2e-38 162.9 92 84.8
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 1.6e-38 162.5 98 83.7
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 4.0e-37 157.9 88 86.4
EL10Ac8g19705 Beta vulgaris HOM05D001966 ORTHO05D007227 5.7e-36 154.1 101 78.2
arahy.Tifrunner.gnm1.ann1.I9YN8I Arachis hypogaea HOM05D001966 ORTHO05D007227 9.2e-34 146.7 94 76.6
arahy.Tifrunner.gnm1.ann1.6ZZ12G Arachis hypogaea HOM05D001966 ORTHO05D007227 1.6e-33 146.0 93 77.4
SHI36394 Sapria himalayana HOM05D001966 ORTHO05D007227 2.9e-32 141.7 78 87.2
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 5.0e-32 141.0 78 88.5
arahy.Tifrunner.gnm1.ann1.3I0RGA Arachis hypogaea HOM05D001966 ORTHO05D007227 1.9e-31 139.0 93 74.2
LjContig00319g0014927 Lotus japonicus HOM05D001966 ORTHO05D007227 2.8e-30 135.2 99 75.8
Gohir.1Z049882 Gossypium hirsutum HOM05D001966 ORTHO05D007227 6.8e-29 130.6 71 87.3
Gohir.A04G039270 Gossypium hirsutum HOM05D001966 ORTHO05D007227 6.8e-29 130.6 71 87.3
Gohir.A05G323724 Gossypium hirsutum HOM05D001966 ORTHO05D007227 6.8e-29 130.6 71 87.3
Hma1.2p1_0544F.1_g175783 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 3.5e-25 118.2 68 83.8
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 5.9e-25 117.5 64 85.9
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 5.9e-25 117.5 64 85.9
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 5.9e-25 117.5 64 85.9
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 5.9e-25 117.5 64 85.9
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 5.9e-25 117.5 64 85.9
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 5.9e-25 117.5 64 85.9
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 5.9e-25 117.5 64 85.9
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 1.0e-24 116.7 65 86.2
Gorai.005G020800 Gossypium raimondii HOM05D001966 ORTHO05D007227 1.3e-24 116.3 82 69.5
Gohir.D02G016950 Gossypium hirsutum HOM05D001966 ORTHO05D007227 2.3e-24 115.5 82 68.3
Sed0012652 Sechium edule HOM05D001966 ORTHO05D007227 3.9e-24 114.8 65 84.6
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 5.0e-24 114.4 65 84.6
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 5.0e-24 114.4 65 84.6
BolSC29t60539H Brassica oleracea HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BolSC29t60556H Brassica oleracea HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BolSC35t60713H Brassica oleracea HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BolSC44t60814H Brassica oleracea HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BolSC45t60900H Brassica oleracea HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BolSC45t60918H Brassica oleracea HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BolSC46t60967H Brassica oleracea HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BolSC49t61133H Brassica oleracea HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BraSC103t45419Z Brassica rapa HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BraSC25t45921Z Brassica rapa HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BraSC59t46509Z Brassica rapa HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
BraSC59t46540Z Brassica rapa HOM05D001966 ORTHO05D007227 6.6e-24 114.0 64 85.9
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 1.6e-22 109.4 61 85.2
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 1.6e-22 109.4 65 84.6
HanXRQChr05g0134861 Helianthus annuus HOM05D001966 ORTHO05D007227 4.0e-21 104.8 58 84.5
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 6.8e-21 104.0 68 75.0
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 8.9e-21 103.6 61 80.3
HPP92_028396 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-20 103.2 63 77.8
HPP92_028404 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-20 103.2 63 77.8
HPP92_028413 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-20 103.2 63 77.8
HPP92_028421 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-20 103.2 63 77.8
HPP92_028428 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-20 103.2 63 77.8
HPP92_028434 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-20 103.2 63 77.8
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 1.5e-20 102.8 68 73.5
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 2.0e-20 102.4 68 73.5
FvH4_c3g00070 Fragaria vesca HOM05D001966 ORTHO05D007227 7.5e-20 100.5 66 80.3
Glyma.08G276350 Glycine max HOM05D001966 ORTHO05D007227 7.5e-20 100.5 96 53.1
Phvul.003G067400 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 7.5e-20 100.5 68 72.1
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 1.3e-19 99.8 66 78.8
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 2.2e-19 99.0 55 83.6
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 8.3e-19 97.1 54 85.2
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 8.3e-19 97.1 54 85.2
Atru.chr9.266 Acer truncatum HOM05D001966 ORTHO05D007227 1.9e-18 95.9 51 92.2
Sed0001460 Sechium edule HOM05D001966 ORTHO05D007227 1.2e-17 93.2 52 82.7
Psat5g118880 Pisum sativum HOM05D001966 ORTHO05D007227 3.5e-17 91.7 53 88.7
BolSC29t60498H Brassica oleracea HOM05D001966 ORTHO05D007227 1.0e-16 90.1 50 84.0
BolSC35t60683H Brassica oleracea HOM05D001966 ORTHO05D007227 1.0e-16 90.1 50 84.0
BolSC44t60831H Brassica oleracea HOM05D001966 ORTHO05D007227 1.0e-16 90.1 50 84.0
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 1.0e-16 90.1 58 74.1
Sed0026700 Sechium edule HOM05D001966 ORTHO05D007227 1.3e-16 89.7 95 55.8
CAN.G1441.4 Capsicum annuum HOM05D001966 ORTHO05D007227 3.9e-16 88.2 53 79.2
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 8.6e-16 87.0 69 65.2
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 1.1e-15 86.7 65 69.2
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 1.1e-15 86.7 52 76.9
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 1.5e-15 86.3 68 64.7
arahy.Tifrunner.gnm1.ann1.ZUEQ40 Arachis hypogaea HOM05D000743 ORTHO05D007227 3.3e-15 85.1 56 75.0
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.3e-15 85.1 60 65.0
Glyma.09G133875 Glycine max HOM05D001966 ORTHO05D007227 3.3e-15 85.1 61 70.5
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 7.3e-15 84.0 50 80.0
EL10As15g24131 Beta vulgaris HOM05D001966 ORTHO05D007227 2.1e-14 82.4 52 75.0
HPP92_008300 Vanilla planifolia HOM05D001966 ORTHO05D007227 3.1e-13 78.6 44 81.8
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 5.2e-13 77.8 39 92.3
Gohir.D02G151976 Gossypium hirsutum HOM05D001966 ORTHO05D010449 1.2e-12 76.6 76 60.5
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 7.5e-12 73.9 51 70.6
Oeu041170.1 Olea europaea HOM05D000708 ORTHO05D007227 7.5e-12 73.9 36 94.4
TPR.G6399 Trifolium pratense HOM05D001966 ORTHO05D007227 7.5e-12 73.9 64 62.5
FAN13G0121 Fragaria x ananassa HOM05D001966 ORTHO05D007227 2.2e-11 72.4 66 63.6
Hma1.2p1_0544F.1_g175786 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 1.1e-10 70.1 38 84.2
arahy.Tifrunner.gnm1.ann1.EF1F4B Arachis hypogaea HOM05D000963 ORTHO05D010073 1.4e-10 69.7 50 76.0
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 1.4e-10 69.7 47 72.3
arahy.Tifrunner.gnm1.ann1.N1DH3R Arachis hypogaea HOM05D001966 ORTHO05D007227 9.2e-10 67.0 58 62.1
arahy.Tifrunner.gnm1.ann1.WHCD0B Arachis hypogaea HOM05D001966 ORTHO05D007227 5.1e-08 61.2 94 39.4
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 6.6e-08 60.8 50 62.0
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 4.3e-07 58.2 40 67.5
Phvul.003G142600 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 9.5e-07 57.0 36 83.3
MELO3C027875.2 Cucumis melo HOM05D001966 ORTHO05D007227 8.1e-06 53.9 33 72.7


User provided reference genes

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