Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 9.3e-213 743.4 415 100.0
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 6.9e-208 727.2 426 96.2
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 6.7e-179 630.9 423 78.7
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 5.7e-178 627.9 426 77.0
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 6.9e-176 620.9 426 79.1
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 1.2e-175 620.2 426 75.8
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.3e-174 616.7 422 75.8
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.8e-174 615.1 426 75.6
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 8.5e-174 614.0 425 78.1
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.1e-173 613.6 422 76.1
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 4.2e-173 611.7 430 78.1
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 9.4e-173 610.5 427 80.6
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 9.4e-173 610.5 426 77.9
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 6.1e-172 607.8 426 78.2
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 1.5e-170 603.2 430 76.0
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 2.6e-170 602.4 421 75.3
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 5.7e-170 601.3 462 75.5
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 7.4e-170 600.9 425 78.1
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 3.7e-169 598.6 425 74.4
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 1.8e-168 596.3 423 74.2
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 3.1e-168 595.5 440 74.5
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 4.1e-168 595.1 423 74.5
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 7.0e-168 594.3 423 75.2
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.6e-167 593.2 423 77.5
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.3e-166 590.1 422 75.1
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 3.8e-166 588.6 426 77.0
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 8.5e-166 587.4 422 74.9
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 2.5e-165 585.9 424 74.3
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 4.2e-165 585.1 422 73.7
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 7.2e-165 584.3 422 73.5
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 1.6e-164 583.2 429 72.7
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 2.7e-164 582.4 424 77.4
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.7e-164 582.4 431 75.2
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.7e-164 582.4 426 73.9
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 6.1e-164 581.3 424 79.0
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.0e-163 580.5 433 73.2
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.4e-163 580.1 424 77.4
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 5.2e-163 578.2 423 77.1
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 6.7e-163 577.8 418 74.6
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 6.7e-163 577.8 418 74.6
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 6.7e-163 577.8 418 74.6
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 8.8e-163 577.4 424 73.3
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 1.1e-162 577.0 418 78.0
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.5e-162 576.6 418 74.4
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 2.0e-162 576.2 418 74.4
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 2.0e-162 576.2 418 74.4
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 4.4e-162 575.1 428 72.9
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 4.4e-162 575.1 420 78.3
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.7e-162 574.7 431 75.2
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 5.7e-162 574.7 426 72.1
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 5.7e-162 574.7 424 71.0
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 1.3e-161 573.5 430 71.9
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.3e-161 573.5 430 76.7
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 4.8e-161 571.6 424 73.1
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 8.2e-161 570.9 418 74.2
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.4e-160 569.3 430 74.4
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 4.1e-160 568.5 424 71.0
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 9.1e-160 567.4 424 70.5
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.6e-159 566.6 427 70.0
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.0e-159 566.2 401 75.1
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 2.0e-159 566.2 424 70.0
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 2.0e-159 566.2 422 70.6
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 2.7e-159 565.8 418 73.0
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 3.5e-159 565.5 421 76.0
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 3.5e-159 565.5 426 72.8
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 5.9e-159 564.7 418 73.0
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 7.7e-159 564.3 433 69.3
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 2.2e-158 562.8 418 72.7
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 5.0e-158 561.6 438 69.6
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 3.2e-157 558.9 418 72.5
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 7.2e-157 557.8 418 72.2
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 9.4e-157 557.4 423 70.4
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 3.6e-156 555.4 429 69.5
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.0e-155 553.9 430 70.0
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.4e-155 553.5 423 70.0
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.8e-155 553.1 382 74.6
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 5.2e-155 551.6 429 68.8
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 1.5e-154 550.1 467 65.5
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 2.6e-154 549.3 429 70.9
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 4.4e-154 548.5 422 70.9
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.8e-152 543.1 423 67.6
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 2.4e-152 542.7 423 70.0
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 4.1e-152 542.0 420 76.0
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 7.0e-152 541.2 422 70.6
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.2e-151 540.4 435 69.0
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 1.6e-151 540.0 434 68.9
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 1.6e-151 540.0 419 74.0
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 2.7e-151 539.3 423 67.6
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.5e-151 538.5 459 67.1
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 4.5e-151 538.5 447 68.0
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.0e-150 537.3 423 68.6
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 1.3e-150 537.0 429 66.9
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 5.0e-150 535.0 423 69.3
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 1.9e-149 533.1 411 69.8
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 2.5e-149 532.7 420 74.5
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 8.0e-148 527.7 431 64.7
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 7.5e-146 521.2 428 65.9
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 1.3e-145 520.4 422 66.1
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 7.7e-143 511.1 432 67.6
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 2.9e-142 509.2 385 70.9
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 3.8e-142 508.8 494 57.7
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 2.5e-141 506.1 380 75.3
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 4.3e-141 505.4 469 62.5
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 7.3e-141 504.6 513 60.2
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 1.5e-138 496.9 425 63.8
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 1.8e-136 490.0 424 65.3
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 2.4e-136 489.6 430 64.2
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 9.2e-136 487.6 482 64.3
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 2.7e-135 486.1 379 75.2
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 5.9e-135 485.0 428 64.7
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 8.3e-129 464.5 380 71.1
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.1e-123 446.0 426 60.8
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 8.9e-123 444.5 418 58.6
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 7.5e-122 441.4 367 66.2
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 2.9e-121 439.5 320 77.8
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 4.9e-121 438.7 418 59.1
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 8.3e-121 438.0 414 64.0
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 7.1e-120 434.9 434 54.6
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 3.5e-119 432.6 415 57.3
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 1.1e-117 427.6 390 62.6
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.1e-111 406.8 427 52.9
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 2.3e-110 403.3 428 53.0
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.7e-108 395.6 399 56.9
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 9.9e-106 387.9 337 62.9
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.1e-104 384.4 434 50.2
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.4e-104 383.3 426 56.6
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.0e-90 337.0 355 55.5
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 3.9e-70 269.6 385 40.0
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 3.1e-59 233.4 426 36.4
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 6.7e-54 215.7 218 56.0
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 8.3e-36 155.6 208 56.7
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 3.4e-29 133.7 84 79.8
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 4.6e-18 96.7 55 83.6
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 5.0e-17 93.2 46 93.5
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 5.0e-17 93.2 46 93.5


User provided reference genes

Program Settings