Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001490 Daucus carota HOM05D007592 ORTHO05D004645 3.4e-127 458.4 239 100.0
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 6.5e-126 454.1 239 99.2
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.8e-76 289.3 220 70.0
Ciclev10023446m.g Citrus clementina HOM05D007592 ORTHO05D004645 9.8e-74 280.8 252 63.1
Oeu029633.1 Olea europaea HOM05D007592 ORTHO05D004645 5.0e-62 241.9 225 60.9
Ciclev10023655m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.9e-57 226.1 195 64.6
Ciclev10027215m.g Citrus clementina HOM05D007592 ORTHO05D004645 3.2e-56 222.6 252 54.4
Ciclev10033648m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.5e-53 213.8 164 73.2
AL6G36070 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.6e-39 167.2 253 41.5
Atru.chr10.1040 Acer truncatum HOM05D007592 ORTHO05D004645 2.1e-39 166.8 221 47.1
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 1.0e-38 164.5 222 43.7
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 4.3e-37 159.1 228 43.4
BraA09t38299Z Brassica rapa HOM05D007592 ORTHO05D004645 7.3e-37 158.3 230 44.8
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 1.3e-36 157.5 254 40.2
AT4G10230 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 2.8e-36 156.4 230 43.9
BolC6t37310H Brassica oleracea HOM05D007592 ORTHO05D004645 3.6e-36 156.0 230 44.3
C06p21250 Brassica napus HOM05D007592 ORTHO05D004645 4.8e-36 155.6 230 44.3
AT1G24380 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 9.0e-35 151.4 230 43.0
AL8G44460 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.9e-32 143.7 202 43.1
Atru.chr5.2435 Acer truncatum HOM05D007743 ORTHO05D004645 2.4e-32 143.3 232 41.4
Atru.chr8.1335 Acer truncatum HOM05D007592 ORTHO05D004645 4.2e-32 142.5 167 53.3
Atru.chr11.101 Acer truncatum HOM05D007592 ORTHO05D004645 7.1e-32 141.7 221 43.0
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 7.1e-32 141.7 251 38.2
Migut.A00242 Erythranthe guttata HOM05D007592 ORTHO05D004645 1.2e-31 141.0 225 43.1
CANSAT35G0055 Cannabis sativa HOM05D007592 ORTHO05D004645 2.7e-31 139.8 230 39.6
CANSAT64G2577 Cannabis sativa HOM05D007592 ORTHO05D004645 2.7e-31 139.8 213 42.7
Atru.chr8.1611 Acer truncatum HOM05D007592 ORTHO05D004645 7.9e-31 138.3 221 43.4
Ciclev10003711m.g Citrus clementina HOM05D007592 ORTHO05D004645 7.9e-31 138.3 120 65.0
DCAR_014165 Daucus carota HOM05D007592 ORTHO05D004645 7.9e-31 138.3 69 98.6
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 1.3e-30 137.5 222 39.6
Manes.07G048750 Manihot esculenta HOM05D007592 ORTHO05D004645 3.9e-30 136.0 214 41.6
Manes.09G090928 Manihot esculenta HOM05D007592 ORTHO05D004645 1.1e-29 134.4 228 36.4
Oeu023351.1 Olea europaea HOM05D007592 ORTHO05D004645 1.5e-29 134.0 211 44.5
Manes.01G069750 Manihot esculenta HOM05D007592 ORTHO05D004645 2.5e-29 133.3 214 40.7
Atru.chr3.1033 Acer truncatum HOM05D007592 ORTHO05D004645 2.1e-28 130.2 146 53.4
Atru.chr6.1370 Acer truncatum HOM05D007592 ORTHO05D004645 2.8e-28 129.8 182 49.5
Atru.chr13.1766 Acer truncatum HOM05D007592 ORTHO05D004645 4.8e-28 129.0 230 41.3
AL2G23940 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 4.8e-28 129.0 190 44.7
Carub.0004s0678 Capsella rubella HOM05D007592 ORTHO05D004645 8.1e-28 128.3 225 36.9
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.4e-27 127.5 229 39.3
Atru.chr12.1217 Acer truncatum HOM05D007592 ORTHO05D004645 2.4e-27 126.7 199 44.2
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 4.0e-27 125.9 239 36.4
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-27 125.9 229 38.9
FAN08G2536 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-27 125.9 229 38.9
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-27 125.9 229 38.9
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-27 125.9 229 38.9
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.2e-26 124.4 229 38.9
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.5e-26 124.0 229 38.4
CSS0013406 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 2.2e-25 120.2 244 34.0
Ciclev10003950m.g Citrus clementina HOM05D007592 ORTHO05D004645 8.4e-25 118.2 74 78.4
Atru.chr6.863 Acer truncatum HOM05D007592 ORTHO05D004645 1.4e-24 117.5 203 42.4
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 1.9e-24 117.1 224 39.3
FAN18G2940 Fragaria x ananassa HOM05D007743 ORTHO05D004645 2.7e-23 113.2 218 38.1
Manes.13G094101 Manihot esculenta HOM05D007592 ORTHO05D004645 3.5e-23 112.8 222 38.7
CARHR103730 Cardamine hirsuta HOM05D007592 ORTHO05D004645 6.0e-23 112.1 202 41.6
C04p29390 Brassica napus HOM05D007592 ORTHO05D004645 7.9e-23 111.7 137 45.3
FAN09G3614 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.0e-22 111.3 235 35.3
CANSAT64G0010 Cannabis sativa HOM05D007592 ORTHO05D004645 1.3e-20 104.4 100 59.0
Atru.chr3.1639 Acer truncatum HOM05D007592 ORTHO05D004645 3.7e-20 102.8 106 57.5
Atru.chr4.1791 Acer truncatum HOM05D007592 ORTHO05D004645 8.2e-20 101.7 112 55.4
Thhalv10019741m.g Eutrema salsugineum HOM05D007592 ORTHO05D004645 1.2e-18 97.8 227 32.6
CANSAT25G1186 Cannabis sativa HOM05D007592 ORTHO05D004645 1.5e-18 97.4 100 57.0
Atru.chr10.191 Acer truncatum HOM05D007592 ORTHO05D004645 5.8e-18 95.5 100 59.0
Oeu019651.1 Olea europaea HOM05D007592 ORTHO05D004645 2.2e-17 93.6 222 32.9
Manes.14G157656 Manihot esculenta HOM05D007743 ORTHO05D010219 4.9e-17 92.4 69 62.3
Manes.03G086209 Manihot esculenta HOM05D007592 ORTHO05D004645 6.5e-17 92.0 66 63.6
Manes.12G071166 Manihot esculenta HOM05D007743 ORTHO05D010219 6.5e-17 92.0 66 63.6
Atru.chr11.1181 Acer truncatum HOM05D000214 ORTHO05D000131 1.9e-16 90.5 69 63.8
Manes.16G106550 Manihot esculenta HOM05D007592 ORTHO05D004645 2.5e-16 90.1 156 39.1
SGA_v2.0_scaffold211G42135 Striga asiatica HOM05D007592 ORTHO05D004645 3.2e-16 89.7 170 34.7
AL1G54420 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 7.1e-16 88.6 106 47.2
CANSAT11G1366 Cannabis sativa HOM05D007592 ORTHO05D004645 7.1e-16 88.6 101 49.5
FAN09G4280 Fragaria x ananassa HOM05D007743 ORTHO05D004645 7.1e-16 88.6 205 34.6
Rhsim01G0124200 Rhododendron simsii HOM05D000422 ORTHO05D004645 2.1e-15 87.0 230 31.7
Manes.15G155750 Manihot esculenta HOM05D007743 ORTHO05D010219 7.9e-15 85.1 61 62.3
Manes.03G096216 Manihot esculenta HOM05D007592 ORTHO05D004645 3.0e-14 83.2 210 32.9
FvH4_1g29461 Fragaria vesca HOM05D007743 ORTHO05D010219 8.7e-14 81.6 148 41.2
AT2G13760 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.1e-13 81.3 194 33.0
AL9U10800 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.5e-13 80.9 103 48.5
FvH4_2g00671 Fragaria vesca HOM05D007743 ORTHO05D004645 1.5e-13 80.9 164 37.2
Manes.12G071232 Manihot esculenta HOM05D007592 ORTHO05D004645 2.5e-13 80.1 124 41.1
Manes.03G086206 Manihot esculenta HOM05D007592 ORTHO05D004645 7.4e-13 78.6 124 40.3
AT1G66235 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.6e-12 77.4 204 34.8
Oeu053537.1 Olea europaea HOM05D007592 ORTHO05D004645 1.1e-11 74.7 104 47.1
Atru.ctg24.16 Acer truncatum HOM05D007592 ORTHO05D004645 1.4e-11 74.3 155 36.8
BcaNung00662 Brassica carinata HOM05D007592 ORTHO05D004645 3.1e-11 73.2 169 35.5
BcaB01g01748 Brassica carinata HOM05D007743 ORTHO05D004645 6.9e-11 72.0 66 51.5
PGSC0003DMG400013032 Solanum tuberosum HOM05D007592 ORTHO05D004645 6.9e-11 72.0 163 33.7
BcaB06g28792 Brassica carinata HOM05D007743 ORTHO05D004645 1.2e-10 71.2 69 49.3
BcaC01g02275 Brassica carinata HOM05D007743 ORTHO05D004645 1.2e-10 71.2 114 38.6
BraA06t26442Z Brassica rapa HOM05D007592 ORTHO05D004645 1.2e-10 71.2 81 49.4
FAN09G0506 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.5e-10 70.9 243 29.2
BcaC08g43897 Brassica carinata HOM05D007743 ORTHO05D004645 2.6e-10 70.1 96 38.5
CARHR180790 Cardamine hirsuta HOM05D007592 ORTHO05D004645 2.6e-10 70.1 95 41.1
Atru.chr2.3826 Acer truncatum HOM05D007592 ORTHO05D004645 3.4e-10 69.7 86 52.3
BcaB04g19609 Brassica carinata HOM05D007743 ORTHO05D004645 5.9e-10 68.9 85 43.5
AL5G14150 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 7.7e-10 68.6 60 51.7
BcaB07g33427 Brassica carinata HOM05D007743 ORTHO05D004645 7.7e-10 68.6 100 38.0
Manes.15G083266 Manihot esculenta HOM05D007592 ORTHO05D004645 7.7e-10 68.6 117 39.3
Atru.chr12.1932 Acer truncatum HOM05D007592 ORTHO05D004645 1.0e-09 68.2 87 51.7
CSS0034959 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.7e-09 67.4 133 37.6
CARHR184030 Cardamine hirsuta HOM05D007592 ORTHO05D004645 1.7e-09 67.4 106 39.6
PGSC0003DMG400046067 Solanum tuberosum HOM05D007592 ORTHO05D004645 2.2e-09 67.0 105 44.8
Atru.chr8.363 Acer truncatum HOM05D007592 ORTHO05D004645 5.0e-09 65.9 127 37.8
CSS0008814 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.0e-09 65.9 182 31.9
CSS0008946 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.0e-09 65.9 182 31.9
CSS0011061 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.0e-09 65.9 182 31.9
CSS0023642 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.0e-09 65.9 182 31.9
CSS0041053 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.0e-09 65.9 182 31.9
PGSC0003DMG400037078 Solanum tuberosum HOM05D008583 ORTHO05D004645 5.0e-09 65.9 118 39.0
FAN18G0507 Fragaria x ananassa HOM05D007743 ORTHO05D004645 6.5e-09 65.5 109 39.4
Atru.chr4.386 Acer truncatum HOM05D007592 ORTHO05D004645 1.1e-08 64.7 106 41.5
BcaB08g34421 Brassica carinata HOM05D007743 ORTHO05D004645 1.4e-08 64.3 71 45.1
AL1G39540 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.9e-08 63.9 60 46.7
SalBow3G0485 Salvia bowleyana HOM05D020195 ORTHO05D023117 1.9e-08 63.9 183 32.2
AL4G18330 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 2.5e-08 63.5 177 32.8
Oeu052134.1 Olea europaea HOM05D001085 ORTHO05D000895 2.5e-08 63.5 86 48.8
CSS0006860 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.2e-08 63.2 185 29.7
CSS0004599 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.2e-08 62.8 234 26.5
CSS0033894 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.2e-08 62.8 230 28.3
CSS0041981 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.2e-08 62.8 230 28.3
BcaB02g10737 Brassica carinata HOM05D007743 ORTHO05D004645 5.5e-08 62.4 121 36.4
FvH4_4g12912 Fragaria vesca HOM05D007743 ORTHO05D004645 5.5e-08 62.4 234 27.4
Aqoxy7G02666 Aquilegia oxysepala HOM05D024774 ORTHO05D004645 7.2e-08 62.0 175 33.1
BolC9t57561H Brassica oleracea HOM05D033289 ORTHO05D033072 7.2e-08 62.0 91 42.9
FAN17G0227 Fragaria x ananassa HOM05D007743 ORTHO05D004645 7.2e-08 62.0 105 38.1
CSS0010386 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.4e-08 61.6 132 34.8
CANSAT01G3197 Cannabis sativa HOM05D001576 ORTHO05D010219 9.4e-08 61.6 218 26.6
CSS0002566 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.2e-07 61.2 185 29.2
CSS0010296 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.6e-07 60.8 185 29.2
CSS0012194 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.6e-07 60.8 185 29.2
Atru.chr7.1149 Acer truncatum HOM05D007592 ORTHO05D004645 4.6e-07 59.3 73 52.1
C02p48070 Brassica napus HOM05D033289 ORTHO05D033072 7.9e-07 58.5 146 32.9
CSS0001664 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.0e-06 58.2 182 29.1
A05p13600 Brassica napus HOM05D000230 ORTHO05D000176 1.4e-06 57.8 102 38.2
BraA05t20297Z Brassica rapa HOM05D000230 ORTHO05D000176 1.4e-06 57.8 102 38.2
RcHm_v2.0_Chr6g0296991 Rosa chinensis HOM05D007743 ORTHO05D004645 1.4e-06 57.8 201 30.3
Hma1.2p1_0921F.1_g236870 Hydrangea macrophylla HOM05D001576 ORTHO05D010219 1.8e-06 57.4 230 27.0
BcaC02g11304 Brassica carinata HOM05D000230 ORTHO05D000176 2.3e-06 57.0 102 36.3
C04p17790 Brassica napus HOM05D000230 ORTHO05D000176 2.3e-06 57.0 102 36.3
BolC4t23327H Brassica oleracea HOM05D000230 ORTHO05D000176 2.3e-06 57.0 102 36.3
CSS0049636 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.9e-06 56.2 129 31.8
Aqoxy1G02423 Aquilegia oxysepala HOM05D024774 ORTHO05D004645 5.1e-06 55.8 217 26.7
CANSAT11G0484 Cannabis sativa HOM05D007743 ORTHO05D004645 5.1e-06 55.8 125 35.2


User provided reference genes

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