Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 3848.1 1960 100.0
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2412.9 1950 64.1
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2321.6 1942 62.2
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2308.1 2031 60.1
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2254.2 1945 60.2
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2249.6 1941 59.9
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2238.0 1947 58.9
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2221.4 1953 59.9
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2195.2 1958 58.4
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2183.7 1951 58.5
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2182.5 1947 58.0
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2181.8 1966 58.0
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2171.7 1946 57.5
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2171.4 1961 58.7
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2169.8 1947 58.0
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2169.4 1947 57.7
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2169.4 1939 57.8
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2167.1 1948 58.1
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2164.4 1951 57.4
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2164.0 1956 58.0
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2162.9 2153 54.5
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2160.2 1969 58.2
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2156.7 1974 56.9
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2149.8 1945 57.7
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2141.7 1943 57.1
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2132.8 1937 57.2
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2130.1 2125 54.9
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2124.0 1942 56.3
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2114.3 1945 56.0
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2112.4 1950 56.7
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2107.8 1941 56.1
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2089.7 1938 57.6
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2080.4 1954 55.3
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2079.3 1951 55.5
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2078.5 1943 56.3
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2076.2 1951 54.9
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2074.7 1945 55.8
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2073.1 1949 55.1
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2071.6 1838 58.2
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2070.8 1948 55.2
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2056.6 1951 54.7
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2044.6 1949 54.4
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2043.9 1947 54.6
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2021.5 1950 54.3
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2019.2 2136 51.4
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2015.7 1961 54.3
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2013.4 1822 56.1
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2010.3 1947 54.1
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2010.3 1979 53.0
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1996.1 1957 54.4
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1993.8 1939 54.1
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1993.4 1938 54.2
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1993.4 1942 54.1
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1986.1 1938 54.3
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1974.1 1946 53.8
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1972.6 1953 53.6
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1970.3 1960 53.8
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1969.1 1947 53.3
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1950.3 1948 53.0
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1944.9 1951 53.4
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1944.5 1952 53.2
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1944.1 1947 53.3
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1944.1 1955 53.0
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1939.9 1959 53.0
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1938.7 1998 52.1
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1932.9 1807 55.4
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1932.1 2242 47.3
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1928.3 1950 52.9
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1927.1 1975 52.6
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1926.8 1976 52.6
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1889.0 1940 51.8
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1869.0 1585 61.8
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1846.2 1963 51.0
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1827.0 1977 50.5
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1788.5 1935 49.7
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1759.2 1831 52.3
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1686.4 1986 47.6
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1572.4 1261 63.5
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1437.9 1171 63.0
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1344.3 1266 55.6
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1312.7 1824 41.4
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1228.0 2071 37.8
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1193.7 1986 37.9
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1189.1 1433 45.8
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1157.5 1055 56.5
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1148.7 2019 36.4
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 1.9e-308 1063.5 1142 51.2
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 8.9e-298 1028.1 1000 54.1
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 3.4e-281 973.0 2129 32.6
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.5e-260 904.4 762 58.5
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.0e-245 853.6 953 49.7
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 6.3e-235 819.3 890 49.4
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.9e-229 800.0 980 45.8
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 8.0e-222 775.8 779 52.4
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.3e-216 758.4 954 45.9
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.8e-213 748.0 1117 40.6
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 1.2e-193 682.2 543 63.4
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 3.4e-172 610.9 478 63.8
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 1.5e-167 595.5 663 49.2
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 8.1e-166 589.7 521 58.7
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 1.0e-152 546.2 527 52.8
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 2.2e-131 475.3 392 62.0
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 5.1e-120 437.6 450 49.1
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 8.8e-120 436.8 292 72.9
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.7e-115 422.5 656 40.5
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 2.7e-113 415.2 432 48.4
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.3e-102 379.8 853 32.0
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 3.8e-91 341.7 216 77.3
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.0e-88 333.6 252 61.5
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.7e-86 325.1 382 47.6
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 7.0e-85 320.9 338 50.9
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 7.3e-82 310.8 325 52.9
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.4e-61 243.4 358 42.7
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.9e-58 233.0 231 49.4
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 7.6e-55 221.1 230 50.4
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 3.1e-48 199.1 194 50.0
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.4e-47 195.3 317 36.6
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 7.6e-47 194.5 194 48.5
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 5.8e-39 168.3 297 35.7
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 7.6e-39 167.9 522 27.6
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 4.9e-38 165.2 208 39.9
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 6.4e-38 164.9 293 36.5
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 5.1e-27 128.6 391 29.7
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 7.4e-26 124.8 146 45.9
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 9.6e-26 124.4 128 51.6
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 9.6e-26 124.4 142 47.9
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 9.6e-26 124.4 141 48.9
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.6e-25 123.6 95 64.2
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 2.2e-22 113.2 94 55.3
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 2.7e-20 106.3 220 32.3
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.5e-20 105.9 159 41.5
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 3.9e-19 102.4 175 37.7
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 6.7e-19 101.7 289 28.0
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 2.5e-18 99.8 99 52.5
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 5.7e-18 98.6 287 28.6
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 3.7e-17 95.9 109 44.0
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 4.5e-15 89.0 145 39.3
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.5e-14 85.1 89 44.9
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.5e-14 85.1 89 44.9
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.4e-13 84.0 89 43.8
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.4e-13 84.0 181 32.0
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 1.2e-12 80.9 113 38.9
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 2.7e-12 79.7 120 36.7
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.6e-12 79.0 77 48.1
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 3.0e-11 76.3 116 37.1
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 3.9e-11 75.9 194 28.4
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.7e-09 70.5 121 35.5
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 8.2e-09 68.2 116 36.2
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 1.4e-08 67.4 80 45.0
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 2.4e-08 66.6 53 56.6
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 3.1e-08 66.2 93 38.7
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 9.1e-08 64.7 73 38.4
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.5e-07 63.9 31 83.9
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 2.6e-07 63.2 46 65.2


User provided reference genes

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