Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 3589.3 1841 100.0
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2107.8 1870 60.7
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1893.6 1884 54.5
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1885.9 1990 53.4
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1877.4 1974 53.7
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1865.1 1876 54.7
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1823.1 1868 53.3
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1819.3 1877 52.8
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1818.9 1870 53.4
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1807.3 1865 52.7
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1804.6 1868 52.8
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1800.0 1865 52.8
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1799.3 1869 53.1
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1794.6 1875 53.1
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1787.7 1859 52.4
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1774.6 1870 52.5
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1774.2 1958 51.7
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1770.0 1873 52.3
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1768.4 1878 52.8
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1767.7 1868 52.1
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1748.0 1868 51.3
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1743.4 1872 51.0
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1729.9 1869 51.1
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1726.5 1860 51.6
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1712.2 1873 50.8
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1709.1 1871 50.4
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1706.0 1873 50.2
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1703.7 1713 54.2
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1692.2 1874 50.3
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1677.1 1871 50.5
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1665.2 1868 50.1
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1663.3 1872 49.6
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1659.8 1881 49.4
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1657.9 1879 49.6
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1655.6 1868 49.8
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1654.8 1873 49.4
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1652.9 1863 49.1
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1652.1 2014 47.9
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1651.7 1870 48.6
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1651.3 1889 49.5
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1649.0 1866 48.8
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1647.9 1871 49.3
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1647.5 1889 49.3
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1647.1 1866 49.5
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1644.4 2057 47.2
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1642.9 1886 48.5
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1642.5 1891 48.8
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1638.2 1512 58.1
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1629.0 1868 48.6
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1628.6 1905 48.3
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1626.7 1870 49.0
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1596.6 1874 47.8
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1588.9 1460 58.2
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1583.2 1726 50.2
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1555.8 1895 47.0
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1552.0 1871 47.4
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1540.4 1872 45.7
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1538.1 1869 46.8
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1536.5 1868 46.7
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1536.5 1868 46.7
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1536.5 1868 46.7
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1535.8 1972 45.1
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1534.6 1865 46.1
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1532.7 1877 46.5
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1531.5 1869 46.6
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1530.8 1865 47.8
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1525.8 1743 48.5
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1521.9 1871 46.2
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1516.5 1926 45.7
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1509.2 1865 46.0
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1473.8 1507 52.7
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1467.2 1877 45.1
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1463.7 1903 45.5
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1434.1 1646 48.7
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1426.8 1875 44.1
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1407.1 1874 44.2
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1399.8 1862 45.1
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1384.4 1729 45.9
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1378.2 1371 53.5
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1284.6 1880 41.8
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1260.0 1903 41.0
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1255.0 1352 52.0
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1246.9 1229 53.5
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1245.7 2070 38.4
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1203.0 1313 51.1
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1166.8 1851 39.6
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1137.9 1399 47.7
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1120.1 1183 53.7
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1109.4 1860 38.2
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 2.0e-275 953.7 842 59.5
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 3.7e-261 906.4 967 52.0
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.9e-249 867.5 1027 46.6
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 4.2e-225 786.6 940 50.5
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 4.0e-207 726.9 937 45.3
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.4e-196 691.8 1961 29.5
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 8.1e-192 676.0 643 55.4
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 8.9e-191 672.5 730 52.5
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.3e-189 668.7 653 56.0
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.3e-181 642.1 839 46.2
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 4.6e-179 633.6 854 44.5
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 4.8e-168 597.0 1830 28.5
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.9e-165 587.8 612 50.8
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.2e-156 557.8 649 46.8
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 9.0e-151 539.7 796 40.1
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.3e-149 535.8 1151 34.1
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 6.7e-146 523.5 534 53.4
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.2e-136 490.0 531 48.8
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.9e-135 486.9 590 48.1
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 2.4e-119 435.3 432 54.9
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 1.2e-110 406.4 421 52.0
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 4.4e-105 387.9 638 39.5
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.8e-104 385.2 437 47.4
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.7e-99 367.9 371 52.6
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 1.4e-98 366.3 440 47.5
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.0e-93 350.1 354 52.8
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 7.3e-92 344.0 430 49.3
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.8e-91 342.0 458 45.0
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 8.3e-88 330.5 345 54.2
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.3e-85 322.4 334 53.6
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.0e-85 322.0 344 51.5
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 1.9e-79 302.8 392 48.5
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.2e-70 273.5 615 33.7
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 3.5e-70 271.9 545 35.4
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 4.7e-67 261.5 343 41.1
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.2e-65 256.9 445 34.6
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 1.1e-63 250.4 258 50.8
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 5.6e-60 238.0 309 43.4
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 9.0e-58 230.7 260 50.4
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 5.8e-57 228.0 222 56.3
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-55 223.8 208 58.2
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 5.8e-49 201.4 194 56.7
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 5.1e-45 188.3 860 23.5
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.2e-41 177.2 183 48.1
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 2.6e-41 176.0 149 64.4
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.2e-40 172.9 290 38.6
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-39 170.6 142 59.9
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.5e-39 169.5 270 39.3
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.5e-38 165.6 264 43.6
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 4.6e-38 165.2 154 53.9
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.0e-37 164.1 208 47.6
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 1.2e-33 150.6 134 59.7
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 2.2e-32 146.4 157 48.4
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 2.9e-32 146.0 860 24.4
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.5e-31 142.9 224 40.2
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 2.3e-29 136.3 131 51.9
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 8.7e-29 134.4 180 42.8
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.5e-28 133.7 143 49.0
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.9e-28 133.3 178 42.1
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-27 129.8 134 55.2
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.8e-26 126.7 131 51.9
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 5.3e-26 125.2 137 56.9
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 1.7e-24 120.2 185 38.9
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.5e-24 118.2 222 33.3
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 3.2e-23 115.9 122 42.6
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.7e-21 108.2 108 52.8
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.7e-19 103.6 91 53.8
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 1.1e-18 100.9 89 56.2
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 5.0e-16 92.0 123 43.9
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-15 90.9 107 47.7
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 1.6e-14 87.0 93 41.9
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 1.8e-13 83.6 221 28.5
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.8e-13 81.3 115 38.3
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 7.0e-10 71.6 87 48.3
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 9.1e-10 71.2 52 67.3
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 1.3e-08 67.4 53 66.0
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 1.9e-07 63.5 57 52.6
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 1.9e-07 63.5 122 33.6
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 2.5e-07 63.2 64 48.4
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 3.2e-07 62.8 57 52.6
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 6.1e-06 58.5 109 35.8


User provided reference genes

Program Settings