Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 1.4e-54 216.1 113 100.0
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 3.3e-48 194.9 104 98.1
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 8.5e-36 153.7 104 76.9
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 2.5e-35 152.1 104 75.0
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.5e-35 152.1 104 76.0
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 7.2e-35 150.6 104 76.0
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.6e-34 149.4 104 74.0
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 2.8e-34 148.7 104 74.0
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 4.7e-34 147.9 104 73.1
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 6.1e-34 147.5 104 74.0
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 8.0e-34 147.1 104 74.0
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.4e-33 146.4 104 76.0
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.4e-33 146.4 112 67.9
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 1.8e-33 146.0 104 70.2
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 2.3e-33 145.6 102 72.5
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.3e-33 145.6 104 72.1
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 4.0e-33 144.8 105 69.5
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 4.0e-33 144.8 104 72.1
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 4.0e-33 144.8 104 70.2
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 4.0e-33 144.8 104 70.2
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 5.2e-33 144.4 104 73.1
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 6.8e-33 144.1 104 69.2
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.8e-33 143.7 104 69.2
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.2e-32 143.3 105 67.6
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.2e-32 143.3 105 67.6
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 1.2e-32 143.3 104 69.2
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.2e-32 143.3 104 69.2
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.2e-32 143.3 104 70.2
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.5e-32 142.9 105 67.6
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.5e-32 142.9 105 67.6
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.5e-32 142.9 105 67.6
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-32 142.9 104 70.2
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-32 142.9 104 70.2
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 2.0e-32 142.5 104 68.3
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.0e-32 142.5 104 72.1
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 2.0e-32 142.5 104 70.2
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 2.6e-32 142.1 105 68.6
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.6e-32 142.1 105 67.6
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.6e-32 142.1 105 67.6
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 2.6e-32 142.1 104 71.2
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.6e-32 142.1 104 71.2
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 2.6e-32 142.1 104 69.2
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 2.6e-32 142.1 104 74.0
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 3.4e-32 141.7 105 68.6
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 3.4e-32 141.7 104 68.3
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 3.4e-32 141.7 104 70.2
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 4.4e-32 141.4 104 73.1
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 4.4e-32 141.4 105 66.7
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 4.4e-32 141.4 104 70.2
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 4.4e-32 141.4 104 68.3
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 4.4e-32 141.4 105 67.6
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 4.4e-32 141.4 105 66.7
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 5.7e-32 141.0 104 69.2
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 5.7e-32 141.0 104 69.2
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 5.7e-32 141.0 104 69.2
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.7e-32 141.0 104 68.3
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 5.7e-32 141.0 104 69.2
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 5.7e-32 141.0 104 69.2
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 7.5e-32 140.6 104 71.2
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 7.5e-32 140.6 105 68.6
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 9.8e-32 140.2 105 66.7
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 9.8e-32 140.2 104 68.3
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 9.8e-32 140.2 104 69.2
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 9.8e-32 140.2 104 68.3
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.3e-31 139.8 105 66.7
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.7e-31 139.4 104 68.3
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.7e-31 139.4 104 69.2
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 2.8e-31 138.7 104 69.2
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 3.7e-31 138.3 102 71.6
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.9e-31 137.9 104 71.2
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 6.3e-31 137.5 104 70.2
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 6.3e-31 137.5 104 67.3
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 8.3e-31 137.1 104 70.2
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 8.3e-31 137.1 104 67.3
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 8.3e-31 137.1 104 68.3
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.1e-30 136.7 104 67.3
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 1.1e-30 136.7 104 69.2
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 1.4e-30 136.3 104 68.3
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 3.1e-30 135.2 104 68.3
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 5.4e-30 134.4 104 67.3
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 5.4e-30 134.4 101 70.3
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 7.0e-30 134.0 111 64.0
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.2e-29 133.3 104 66.3
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.6e-29 132.9 104 64.4
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 2.0e-29 132.5 104 65.4
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 2.0e-29 132.5 104 65.4
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.7e-29 132.1 104 67.3
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.7e-29 132.1 109 68.8
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 3.5e-29 131.7 104 65.4
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 5.9e-29 131.0 104 65.4
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.8e-29 130.6 104 65.4
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.0e-28 130.2 104 66.3
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 1.3e-28 129.8 104 64.4
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.3e-28 129.8 104 63.5
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.7e-28 129.4 102 65.7
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 1.7e-28 129.4 104 64.4
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 2.9e-28 128.6 104 66.3
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 6.6e-28 127.5 104 62.5
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 6.6e-28 127.5 131 55.0
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 8.6e-28 127.1 99 63.6
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.5e-27 126.3 99 64.6
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.5e-27 125.6 109 58.7
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 4.3e-27 124.8 104 62.5
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.3e-27 124.0 100 65.0
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.6e-26 122.9 102 66.7
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.8e-25 119.4 104 59.6
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.0e-25 118.6 80 80.0
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 9.8e-24 113.6 81 72.8
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.4e-22 109.8 101 54.5
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 5.9e-21 104.4 68 75.0
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 1.0e-20 103.6 105 50.5
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.3e-20 103.2 108 57.4
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 3.9e-20 101.7 98 56.1
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-18 96.3 123 52.8
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 2.1e-18 95.9 61 82.0
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 2.8e-18 95.5 104 49.0
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.1e-17 92.0 79 62.0
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 5.8e-16 87.8 104 51.0
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.3e-15 86.7 58 72.4
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 1.1e-14 83.6 68 69.1
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 3.2e-14 82.0 71 64.8
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 3.2e-14 82.0 104 48.1
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.4e-14 81.3 104 49.0
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-12 76.3 62 67.7
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 1.1e-11 73.6 101 42.6
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.5e-11 73.2 104 43.3
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 3.3e-11 72.0 63 61.9
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 1.2e-10 70.1 54 61.1
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 2.3e-09 65.9 68 48.5
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 6.8e-09 64.3 48 64.6
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.9e-07 58.9 48 62.5
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 8.3e-07 57.4 58 53.4
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 5.4e-06 54.7 98 37.8


User provided reference genes

Program Settings