Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 2.3e-35 152.1 103 100.0
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 3.6e-17 91.7 100 62.0
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 4.8e-17 91.3 99 61.6
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 6.2e-17 90.9 101 54.5
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 6.2e-17 90.9 99 60.6
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 1.1e-16 90.1 98 58.2
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 4.0e-16 88.2 101 61.4
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 1.2e-15 86.7 107 54.2
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 1.5e-15 86.3 101 56.4
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 1.5e-15 86.3 100 58.0
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 2.0e-15 85.9 100 57.0
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 2.6e-15 85.5 92 60.9
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 3.4e-15 85.1 100 58.0
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 3.4e-15 85.1 105 73.3
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 3.4e-15 85.1 100 58.0
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 4.4e-15 84.7 100 52.0
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 4.4e-15 84.7 100 59.0
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 4.4e-15 84.7 100 59.0
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 4.4e-15 84.7 100 57.0
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 4.4e-15 84.7 100 59.0
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 5.8e-15 84.3 104 55.8
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 7.6e-15 84.0 102 53.9
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 7.6e-15 84.0 100 56.0
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 1.3e-14 83.2 100 57.0
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 1.7e-14 82.8 104 53.8
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 1.7e-14 82.8 100 58.0
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 2.2e-14 82.4 104 66.3
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 3.8e-14 81.6 99 55.6
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 4.9e-14 81.3 102 56.9
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 6.4e-14 80.9 103 52.4
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 8.4e-14 80.5 102 64.7
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 1.1e-13 80.1 100 52.0
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 1.4e-13 79.7 100 60.0
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 1.4e-13 79.7 102 56.9
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.9e-13 79.3 99 66.7
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 1.9e-13 79.3 104 54.8
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 2.4e-13 79.0 102 69.6
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 3.2e-13 78.6 103 53.4
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 3.2e-13 78.6 106 59.4
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 4.2e-13 78.2 102 52.9
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 5.4e-13 77.8 103 52.4
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 7.1e-13 77.4 99 57.6
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 7.1e-13 77.4 98 53.1
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 7.1e-13 77.4 99 55.6
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 7.1e-13 77.4 100 55.0
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 9.3e-13 77.0 98 59.2
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 9.3e-13 77.0 100 56.0
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 1.2e-12 76.6 98 52.0
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 1.6e-12 76.3 100 58.0
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 2.7e-12 75.5 99 54.5
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 2.7e-12 75.5 98 54.1
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 4.6e-12 74.7 99 65.7
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 6.0e-12 74.3 99 65.7
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 1.0e-11 73.6 100 52.0
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 1.0e-11 73.6 105 51.4
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 1.7e-11 72.8 108 49.1
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 1.7e-11 72.8 53 81.1
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 2.3e-11 72.4 99 64.6
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.3e-11 72.4 99 64.6
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 2.3e-11 72.4 99 53.5
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 3.0e-11 72.0 101 51.5
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 5.1e-11 71.2 101 59.4
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 6.6e-11 70.9 101 56.4
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 8.7e-11 70.5 103 49.5
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 1.1e-10 70.1 103 48.5
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.1e-10 70.1 101 58.4
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 1.1e-10 70.1 98 67.3
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.5e-10 69.7 99 52.5
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 1.5e-10 69.7 97 49.5
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 1.5e-10 69.7 101 54.5
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 1.5e-10 69.7 101 55.4
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 2.5e-10 68.9 101 57.4
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 3.3e-10 68.6 97 48.5
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 4.3e-10 68.2 101 54.5
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 5.6e-10 67.8 103 47.6
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 7.3e-10 67.4 53 75.5
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 1.3e-09 66.6 108 47.2
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 1.6e-09 66.2 48 77.1
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 1.6e-09 66.2 48 77.1
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 1.6e-09 66.2 107 62.6
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 2.8e-09 65.5 107 50.5
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 4.8e-09 64.7 97 48.5
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 1.4e-08 63.2 46 80.4
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 1.8e-08 62.8 105 49.5
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 1.8e-08 62.8 98 48.0
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 1.8e-08 62.8 98 48.0
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 3.1e-08 62.0 100 51.0
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 3.1e-08 62.0 100 51.0
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 3.1e-08 62.0 98 49.0
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 6.9e-08 60.8 104 50.0
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 6.9e-08 60.8 103 50.5
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 9.0e-08 60.5 50 72.0
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 1.2e-07 60.1 103 49.5
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 1.2e-07 60.1 101 51.5
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 2.0e-07 59.3 103 50.5
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 2.0e-07 59.3 103 52.4
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 2.0e-07 59.3 103 49.5
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 2.6e-07 58.9 103 48.5
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 2.6e-07 58.9 103 48.5
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 4.5e-07 58.2 103 49.5
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 5.8e-07 57.8 103 50.5
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 5.8e-07 57.8 99 47.5
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 5.8e-07 57.8 103 48.5
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 5.8e-07 57.8 99 47.5
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 5.8e-07 57.8 111 40.5
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 7.6e-07 57.4 103 48.5
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 7.6e-07 57.4 46 78.3
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 9.9e-07 57.0 104 40.4
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 9.9e-07 57.0 99 47.5
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 1.7e-06 56.2 105 47.6


User provided reference genes

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