Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 1.0e-298 1029.2 511 100.0
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 2.9e-155 552.7 527 55.4
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 2.9e-139 499.6 521 51.2
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 4.9e-131 472.2 534 47.6
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 4.9e-131 472.2 520 49.0
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 4.6e-129 465.7 519 49.3
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 7.3e-127 458.4 519 48.6
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 1.6e-126 457.2 523 47.2
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 2.8e-126 456.4 521 47.4
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 8.1e-126 454.9 520 48.7
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 1.2e-124 451.1 522 47.5
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 2.0e-124 450.3 527 47.4
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 8.4e-123 444.9 539 46.2
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 4.2e-122 442.6 526 48.5
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 4.3e-119 432.6 517 48.2
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 5.6e-119 432.2 521 47.4
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 1.3e-118 431.0 525 44.0
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 1.3e-118 431.0 512 48.4
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 1.1e-117 427.9 531 46.0
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.1e-117 426.4 516 45.0
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 3.1e-117 426.4 528 44.9
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 1.5e-116 424.1 525 45.9
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 2.0e-116 423.7 462 49.6
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 3.4e-116 422.9 525 45.1
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.9e-115 419.9 486 47.1
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 1.2e-113 414.5 523 45.1
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 1.3e-112 411.0 527 45.7
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 1.1e-111 407.9 518 46.1
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 1.5e-111 407.5 513 47.2
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 2.5e-111 406.8 521 45.1
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 4.3e-111 406.0 523 47.0
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 1.3e-110 404.4 520 42.5
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 2.1e-110 403.7 525 46.5
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 3.7e-110 402.9 516 44.8
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 3.7e-110 402.9 529 44.8
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 1.8e-109 400.6 519 45.3
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 1.8e-109 400.6 518 44.6
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.1e-109 399.8 479 46.1
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 3.1e-109 399.8 524 45.0
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 5.3e-109 399.1 529 44.6
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 2.6e-108 396.7 460 48.3
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 1.7e-107 394.0 523 44.2
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 1.4e-106 391.0 519 44.5
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 1.9e-106 390.6 524 42.7
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 5.5e-106 389.0 496 44.6
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 7.9e-105 385.2 519 44.3
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 2.3e-104 383.6 653 38.9
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 3.0e-104 383.3 527 42.5
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 1.4e-101 374.4 523 42.6
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 6.9e-101 372.1 462 46.5
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 3.4e-100 369.8 516 43.8
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 8.5e-99 365.2 521 41.5
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 3.2e-98 363.2 422 45.5
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 3.2e-98 363.2 517 42.4
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 2.7e-97 360.1 543 42.5
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 7.9e-97 358.6 475 43.4
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 7.9e-97 358.6 669 36.9
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 1.0e-96 358.2 530 42.3
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 2.3e-96 357.1 525 44.0
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 2.3e-96 357.1 517 43.5
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 3.0e-96 356.7 522 43.5
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 6.7e-96 355.5 524 44.3
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 1.1e-95 354.8 362 51.4
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 2.5e-95 353.6 522 44.1
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 4.3e-95 352.8 523 44.4
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 4.3e-95 352.8 525 41.9
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 5.7e-95 352.4 520 42.7
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 2.8e-94 350.1 527 43.5
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 6.3e-94 349.0 474 42.4
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 5.3e-93 345.9 518 40.0
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 1.5e-92 344.4 525 42.7
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 3.4e-92 343.2 447 45.6
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 5.5e-90 335.9 372 49.2
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 5.1e-88 329.3 523 40.2
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 3.3e-87 326.6 521 37.4
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 6.3e-86 322.4 369 48.2
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 1.1e-85 321.6 447 43.8
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 2.0e-84 317.4 893 28.6
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 2.0e-84 317.4 530 38.1
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 1.6e-81 307.8 537 35.0
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 3.6e-81 306.6 481 41.6
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 8.0e-81 305.4 408 44.6
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 5.3e-77 292.7 521 36.5
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 5.0e-75 286.2 415 40.2
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 5.5e-74 282.7 532 36.3
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 3.0e-72 276.9 416 40.9
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 4.8e-70 269.6 462 38.3
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 4.8e-62 243.0 274 50.4
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 9.5e-58 228.8 325 42.5
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 1.0e-56 225.3 543 30.0
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 2.0e-55 221.1 315 41.9
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 1.4e-53 214.9 329 39.8
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 7.3e-50 202.6 285 42.5
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 2.6e-47 194.1 336 37.5
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 1.1e-45 188.7 554 27.6
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 1.4e-45 188.3 282 37.6
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 9.8e-39 165.6 282 38.7
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 7.0e-37 159.5 284 36.3
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 8.6e-35 152.5 134 58.2
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 2.5e-34 151.0 153 52.3
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 2.1e-33 147.9 253 39.9
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 1.8e-32 144.8 92 71.7
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 1.4e-29 135.2 116 56.9
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 5.4e-29 133.3 566 24.2
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 4.6e-28 130.2 537 25.0
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 6.2e-25 119.8 264 29.9
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 5.2e-24 116.7 104 53.8
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 2.6e-23 114.4 168 39.3
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 2.2e-22 111.3 197 34.5
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 6.4e-22 109.8 140 45.0
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 8.7e-19 99.4 137 39.4
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 2.0e-15 88.2 247 30.0
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 7.1e-13 79.7 140 46.4
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 2.1e-12 78.2 136 44.1
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 1.7e-11 75.1 96 49.0
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 1.7e-11 75.1 142 32.4
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 3.6e-09 67.4 138 39.9
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 3.6e-09 67.4 138 39.9
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 1.8e-08 65.1 68 47.1
CiPaw.09G139700 Carya illinoinensis HOM05D005725 ORTHO05D007531 5.8e-07 60.1 141 34.0
Atru.chr3.3228 Acer truncatum HOM05D000154 ORTHO05D000092 2.9e-06 57.8 61 49.2


User provided reference genes

Program Settings