Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001119 Daucus carota HOM05D005364 ORTHO05D006554 4.4e-132 474.6 227 100.0
Lj4C689G10 Lonicera japonica HOM05D005364 ORTHO05D006554 6.9e-77 291.2 201 71.1
Dinv25792 Davidia involucrata HOM05D005364 ORTHO05D006554 3.0e-72 275.8 224 62.9
Hma1.2p1_0107F.1_g051330 Hydrangea macrophylla HOM05D005364 ORTHO05D006554 9.6e-71 270.8 198 66.7
Actinidia03441 Actinidia chinensis HOM05D005364 ORTHO05D006554 1.4e-69 266.9 172 73.8
Migut.C01101 Erythranthe guttata HOM05D005364 ORTHO05D006554 2.6e-68 262.7 227 59.0
QL09p029051 Quercus lobata HOM05D005364 ORTHO05D006554 5.8e-68 261.5 225 60.0
Solyc04g064560.4 Solanum lycopersicum HOM05D005364 ORTHO05D006554 2.2e-67 259.6 225 60.0
MSTRG.1383 Avicennia marina HOM05D005364 ORTHO05D006554 2.9e-67 259.2 225 59.1
CSS0030633 Camellia sinensis var. sinensis HOM05D005364 ORTHO05D006554 2.9e-67 259.2 198 65.7
CSS0018960 Camellia sinensis var. sinensis HOM05D005364 ORTHO05D006554 3.8e-67 258.8 191 68.1
Sopen04g026510 Solanum pennellii HOM05D005364 ORTHO05D006554 8.4e-67 257.7 222 59.9
GSVIVG01010009001 Vitis vinifera HOM05D005364 ORTHO05D006554 8.4e-67 257.7 201 64.2
Manes.18G085705 Manihot esculenta HOM05D005364 ORTHO05D006554 1.4e-66 256.9 205 61.5
CSS0048679 Camellia sinensis var. sinensis HOM05D005364 ORTHO05D006554 1.9e-66 256.5 191 67.5
CAN.G657.4 Capsicum annuum HOM05D005364 ORTHO05D006554 5.5e-66 255.0 225 60.0
Nitab4.5_0000174g0280 Nicotiana tabacum HOM05D005364 ORTHO05D006554 2.1e-65 253.1 224 58.9
SalBow7G3071 Salvia bowleyana HOM05D005364 ORTHO05D006554 4.6e-65 251.9 234 55.1
Lsat_1_v5_gn_9_124401 Lactuca sativa HOM05D005364 ORTHO05D006554 6.1e-65 251.5 201 63.2
SGA_v2.0_scaffold24G10388 Striga asiatica HOM05D005364 ORTHO05D006554 7.9e-65 251.1 225 56.9
Nitab4.5_0007147g0010 Nicotiana tabacum HOM05D005364 ORTHO05D006554 1.8e-64 250.0 226 58.4
Eucgr.F02755 Eucalyptus grandis HOM05D005364 ORTHO05D006554 5.1e-64 248.4 204 61.8
TAR628G1468 Trochodendron aralioides HOM05D005364 ORTHO05D006554 5.1e-64 248.4 220 60.0
Cfa018384 Carpinus fangiana HOM05D005364 ORTHO05D006554 6.7e-64 248.1 219 60.7
Haze_17688 Corylus avellana HOM05D005364 ORTHO05D006554 6.7e-64 248.1 225 60.0
Potri.005G186600 Populus trichocarpa HOM05D005364 ORTHO05D006554 6.7e-64 248.1 214 58.9
Sabra05G0142500 Salix brachista HOM05D005364 ORTHO05D006554 6.7e-64 248.1 200 62.5
TWI34G0076 Tripterygium wilfordii HOM05D005364 ORTHO05D006554 6.7e-64 248.1 198 63.6
Atru.chr13.1665 Acer truncatum HOM05D005364 ORTHO05D006554 8.7e-64 247.7 215 59.5
Hund17384 Selenicereus undatus HOM05D005364 ORTHO05D006554 3.3e-63 245.7 187 63.6
Ciclev10000720m.g Citrus clementina HOM05D005364 ORTHO05D006554 4.8e-62 241.9 196 60.7
Sc15g0007440 Simmondsia chinensis HOM05D001552 ORTHO05D003294 6.3e-62 241.5 216 59.7
HanXRQChr15g0484621 Helianthus annuus HOM05D005364 ORTHO05D006554 1.1e-61 240.7 204 59.3
VMungo0647G2252 Vigna mungo HOM05D005364 ORTHO05D006554 1.1e-61 240.7 197 60.4
CiPaw.15G022800 Carya illinoinensis HOM05D005364 ORTHO05D006554 1.4e-61 240.4 225 56.0
Peaxi162Scf00066g01936 Petunia axillaris HOM05D005364 ORTHO05D006554 3.1e-61 239.2 200 60.5
Glyma.14G119200 Glycine max HOM05D005364 ORTHO05D006554 4.1e-61 238.8 197 61.4
Thecc.08G141100 Theobroma cacao HOM05D005364 ORTHO05D006554 4.1e-61 238.8 197 61.4
Gorai.005G083600 Gossypium raimondii HOM05D005364 ORTHO05D006554 5.3e-61 238.4 197 60.4
Duzib041G0781 Durio zibethinus HOM05D005364 ORTHO05D006554 6.9e-61 238.0 197 61.4
ECA232G1379 Erigeron canadensis HOM05D005364 ORTHO05D006554 9.0e-61 237.7 214 55.6
Lj1g0018455 Lotus japonicus HOM05D005364 ORTHO05D006554 9.0e-61 237.7 198 60.1
Cc10_g13140 Coffea canephora HOM05D005364 ORTHO05D006554 1.2e-60 237.3 202 61.9
Nn5g28547 Nelumbo nucifera HOM05D005364 ORTHO05D006554 2.0e-60 236.5 221 56.1
Phvul.001G064400 Phaseolus vulgaris HOM05D005364 ORTHO05D006554 3.4e-60 235.7 225 55.1
CANSAT25G0570 Cannabis sativa HOM05D005364 ORTHO05D006554 4.5e-60 235.3 204 57.4
Gohir.D02G074200 Gossypium hirsutum HOM05D005364 ORTHO05D006554 4.5e-60 235.3 197 59.9
Rhsim11G0077000 Rhododendron simsii HOM05D005364 ORTHO05D006554 4.5e-60 235.3 201 60.2
COL.COLO4_33812 Corchorus olitorius HOM05D005364 ORTHO05D006554 5.0e-59 231.9 216 55.1
PSO541G2378 Papaver somniferum HOM05D005364 ORTHO05D006554 6.5e-59 231.5 171 66.1
arahy.Tifrunner.gnm1.ann1.3V9M2M Arachis hypogaea HOM05D005364 ORTHO05D006554 1.1e-58 230.7 220 57.3
Sed0004836 Sechium edule HOM05D005364 ORTHO05D006554 1.1e-58 230.7 224 52.7
ClCG08G002730 Citrullus lanatus HOM05D005364 ORTHO05D006554 1.9e-58 229.9 174 66.1
PSO675G4293 Papaver somniferum HOM05D005364 ORTHO05D006554 1.9e-58 229.9 171 65.5
MBI03_g35292_MAGBIO Magnolia biondii HOM05D005364 ORTHO05D006554 2.5e-58 229.6 202 60.4
Prupe.8G016300 Prunus persica HOM05D005364 ORTHO05D006554 2.5e-58 229.6 227 52.9
Lalb_Chr25g0281671 Lupinus albus HOM05D005364 ORTHO05D006554 3.2e-58 229.2 198 58.1
Ah.05g169340 Amaranthus hybridus HOM05D005364 ORTHO05D006554 5.5e-58 228.4 204 57.8
MELO3C010582.2 Cucumis melo HOM05D005364 ORTHO05D006554 9.4e-58 227.6 227 53.7
PGR142G4297 Punica granatum HOM05D005364 ORTHO05D006554 9.4e-58 227.6 215 55.8
Psat6g039520 Pisum sativum HOM05D005364 ORTHO05D006554 2.1e-57 226.5 199 58.8
CsaV3_6G035590 Cucumis sativus L. HOM05D005364 ORTHO05D006554 4.6e-57 225.3 229 54.1
Medtr1g029410 Medicago truncatula HOM05D005364 ORTHO05D006554 4.6e-57 225.3 223 54.7
CDE02G4564 Ceratophyllum demersum HOM05D005364 ORTHO05D006554 1.0e-56 224.2 205 55.6
AUR62013475 Chenopodium quinoa HOM05D005364 ORTHO05D006554 1.0e-56 224.2 201 56.2
Hund26737 Selenicereus undatus HOM05D008449 ORTHO05D010615 1.4e-56 223.8 252 50.0
THA.LOC104798861 Tarenaya hassleriana HOM05D005364 ORTHO05D006554 3.0e-56 222.6 231 52.4
Aqoxy6G00357 Aquilegia oxysepala HOM05D005364 ORTHO05D006554 8.8e-56 221.1 200 55.5
MD05G1011300 Malus domestica HOM05D005364 ORTHO05D006554 1.1e-55 220.7 228 52.2
BraA06t26562Z Brassica rapa HOM05D005364 ORTHO05D006554 2.0e-55 219.9 210 53.8
Thhalv10003904m.g Eutrema salsugineum HOM05D005364 ORTHO05D006554 3.3e-55 219.2 203 57.1
AUR62026796 Chenopodium quinoa HOM05D005364 ORTHO05D006554 5.7e-55 218.4 201 56.2
BcaNung04840 Brassica carinata HOM05D005364 ORTHO05D006554 1.3e-54 217.2 211 55.0
MD10G1011100 Malus domestica HOM05D005364 ORTHO05D006554 1.3e-54 217.2 227 52.0
BcaB07g29980 Brassica carinata HOM05D005364 ORTHO05D006554 1.7e-54 216.9 215 54.9
C07p42120 Brassica napus HOM05D005364 ORTHO05D006554 1.7e-54 216.9 211 54.5
Lalb_Chr06g0173651 Lupinus albus HOM05D005364 ORTHO05D006554 1.7e-54 216.9 200 56.0
TPR.G33326 Trifolium pratense HOM05D005364 ORTHO05D006554 2.8e-54 216.1 221 52.5
A06p36390 Brassica napus HOM05D005364 ORTHO05D006554 3.7e-54 215.7 211 53.1
AT5G25800 Arabidopsis thaliana HOM05D005364 ORTHO05D006554 6.3e-54 214.9 224 51.8
ATR0138G016 Amborella trichopoda HOM05D005364 ORTHO05D006554 8.2e-54 214.5 210 56.2
AL6G37660 Arabidopsis lyrata HOM05D005364 ORTHO05D006554 1.8e-53 213.4 226 52.2
BcaNung03925 Brassica carinata HOM05D005364 ORTHO05D006554 1.8e-53 213.4 211 54.0
Carub.0006s2357 Capsella rubella HOM05D005364 ORTHO05D006554 1.8e-53 213.4 227 52.4
Ca_12657_v3 Cicer arietinum L. HOM05D005364 ORTHO05D003291 1.8e-53 213.4 201 55.7
Aa31LG11G4810 Aethionema arabicum HOM05D005364 ORTHO05D006554 2.4e-53 213.0 223 51.6
RcHm_v2.0_Chr6g0277571 Rosa chinensis HOM05D005364 ORTHO05D006554 2.4e-53 213.0 229 49.8
FAN20G2210 Fragaria x ananassa HOM05D005364 ORTHO05D006554 9.1e-53 211.1 202 53.5
Sp2g21830 Schrenkiella parvula HOM05D005364 ORTHO05D006554 1.5e-52 210.3 210 53.8
BcaC03g17892 Brassica carinata HOM05D005364 ORTHO05D006554 2.6e-52 209.5 198 54.5
DCAR_010238 Daucus carota HOM05D005364 ORTHO05D006554 2.6e-52 209.5 224 51.8
Glyma.13G037300 Glycine max HOM05D005364 ORTHO05D006554 2.6e-52 209.5 159 65.4
Oeu001555.1 Olea europaea HOM05D005364 ORTHO05D006554 2.6e-52 209.5 157 64.3
C02p59350 Brassica napus HOM05D005364 ORTHO05D006554 3.4e-52 209.1 198 54.5
BolC7t44743H Brassica oleracea HOM05D005364 ORTHO05D006554 5.9e-52 208.4 213 53.1
FAN15G1836 Fragaria x ananassa HOM05D005364 ORTHO05D006554 1.7e-51 206.8 212 50.9
FvH4_2g15020 Fragaria vesca HOM05D005364 ORTHO05D006554 5.0e-51 205.3 230 49.1
Gohir.A02G068200 Gossypium hirsutum HOM05D005364 ORTHO05D006554 5.0e-51 205.3 156 64.1
A02p39590 Brassica napus HOM05D005364 ORTHO05D006554 1.4e-50 203.8 198 53.5
BolC2t11997H Brassica oleracea HOM05D005364 ORTHO05D006554 1.4e-50 203.8 200 53.0
CARHR187620 Cardamine hirsuta HOM05D005364 ORTHO05D006554 1.9e-50 203.4 205 54.1
FAN27G1309 Fragaria x ananassa HOM05D005364 ORTHO05D006554 1.9e-50 203.4 230 48.7
Os12g0188900 Oryza sativa ssp. japonica HOM05D005364 ORTHO05D006554 4.2e-50 202.2 174 56.9
Zm00001eb138630 Zea mays HOM05D005364 ORTHO05D006554 5.5e-50 201.8 171 58.5
Zm00001eb409200 Zea mays HOM05D005364 ORTHO05D006554 2.7e-49 199.5 211 50.7
FAN24G1520 Fragaria x ananassa HOM05D005364 ORTHO05D006554 3.6e-49 199.1 235 48.1
vmacro00886 Vaccinium macrocarpon HOM05D005364 ORTHO05D006554 8.8e-48 194.5 316 38.9
BraA02t08927Z Brassica rapa HOM05D005364 ORTHO05D006554 1.1e-47 194.1 201 51.7
HPP92_019395 Vanilla planifolia HOM05D005364 ORTHO05D006554 2.2e-46 189.9 171 53.2
HPP92_019394 Vanilla planifolia HOM05D005364 ORTHO05D006554 8.2e-46 188.0 171 52.6
HPP92_021466 Vanilla planifolia HOM05D005364 ORTHO05D006554 4.1e-45 185.7 189 51.3
Dinv41138 Davidia involucrata HOM05D005364 ORTHO05D006554 1.2e-44 184.1 198 52.5
CDE08G0765 Ceratophyllum demersum HOM05D005364 ORTHO05D006554 4.2e-42 175.6 186 49.5
AagrBONN_evm.TU.Sc2ySwM_344.2478 Anthoceros agrestis HOM05D005364 ORTHO05D006554 2.0e-31 140.2 237 41.8
Pp3c1_5030 Physcomitrium patens HOM05D005364 ORTHO05D006554 2.6e-31 139.8 237 38.4
SEGI_12292 Sequoiadendron giganteum HOM05D005364 ORTHO05D006554 1.3e-27 127.5 88 65.9
Mapoly0062s0092 Marchantia polymorpha HOM05D005364 ORTHO05D006554 1.6e-25 120.6 237 34.6
Pp3c7_16700 Physcomitrium patens HOM05D005364 ORTHO05D006554 6.1e-25 118.6 167 41.3
Sc15g0007420 Simmondsia chinensis HOM05D005364 ORTHO05D006554 1.7e-22 110.5 99 59.6
CBR_g39514 Chara braunii HOM05D005364 ORTHO05D006554 2.0e-15 87.0 200 32.0
HanXRQChr16g0503811 Helianthus annuus HOM05D005364 ORTHO05D006554 8.3e-14 81.6 53 66.0
EL10Ac1g01440 Beta vulgaris HOM05D005364 ORTHO05D006554 1.6e-12 77.4 51 68.6
SHI09270 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-08 63.2 49 59.2
SEGI_36407 Sequoiadendron giganteum HOM05D005364 ORTHO05D006554 6.8e-08 62.0 57 52.6
PRCOL_00002441 Prasinoderma coloniale HOM05D005364 ORTHO05D006554 5.8e-07 58.9 163 26.4


User provided reference genes

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