Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 2843.1 1451 100.0
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1724.1 1474 64.0
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1628.2 1475 60.6
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1574.3 1484 59.0
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1574.3 1477 59.0
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1568.1 1476 59.6
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1567.4 1465 59.8
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1553.1 1497 58.5
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1546.9 1534 58.3
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1542.7 1467 59.2
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1537.7 1457 58.4
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1526.9 1454 58.6
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1517.7 1484 58.0
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1517.7 1481 56.9
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1510.7 1474 58.0
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1502.3 1471 57.4
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1498.4 1480 56.8
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1493.8 1448 57.7
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1492.6 1477 57.5
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1489.2 1483 57.3
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1486.5 1480 57.4
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1486.1 1473 56.3
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1486.1 1484 57.4
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1484.2 1484 57.3
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1483.4 1466 56.8
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1478.4 1486 57.1
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1477.2 1468 56.7
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1471.8 1500 55.6
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1471.8 1484 55.9
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1470.7 1539 55.6
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1469.1 1507 55.3
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1469.1 1350 61.3
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1467.6 1477 55.8
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1464.9 1485 55.6
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1463.7 1451 56.4
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1461.4 1485 55.4
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1459.5 1472 56.0
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1458.7 1476 55.8
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1456.0 1461 56.5
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1455.3 1462 56.1
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1454.9 1475 55.1
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1454.5 1472 55.8
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1449.5 1487 55.7
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1442.2 1482 55.3
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1419.8 1546 53.3
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1410.2 1473 54.7
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1400.6 1258 61.2
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1390.6 1475 54.0
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1388.2 1372 57.0
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1387.9 1450 55.4
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1384.8 1493 54.3
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1384.8 1476 54.1
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1379.0 1466 54.4
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1377.8 1491 53.6
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1370.9 1473 52.9
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1361.3 1490 53.5
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1353.6 1470 53.5
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1350.9 1459 53.8
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1347.8 1438 54.5
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1345.9 1486 53.0
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1345.1 1389 55.2
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1342.8 1490 53.0
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1311.6 1451 52.8
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1309.7 1500 51.1
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1301.2 1444 53.0
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1292.3 1449 51.6
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1292.3 1474 51.0
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1287.7 1458 51.9
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1281.9 1468 52.0
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1281.2 1457 51.5
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1279.2 1490 51.3
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1270.0 1459 51.3
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1265.0 1445 51.3
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1260.0 1445 51.3
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1256.9 1454 51.5
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1254.6 1310 54.8
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1253.4 1456 51.4
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1250.0 1456 51.3
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1246.1 1281 55.2
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1245.3 1455 51.1
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1241.5 1462 50.2
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1241.5 1286 55.3
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1239.2 1462 50.1
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1222.6 1449 49.3
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1196.0 1445 48.7
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1195.3 1389 49.4
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1179.1 1149 57.2
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1164.1 1088 60.4
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1122.5 1147 55.0
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1112.8 927 65.0
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 9.9e-312 1074.7 1305 50.2
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 4.9e-309 1065.1 1107 56.2
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.0e-306 1055.8 1347 47.4
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 1.7e-298 1030.0 1110 53.8
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 3.9e-266 922.5 1324 44.6
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 9.3e-260 901.4 1044 50.9
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 2.4e-247 860.1 1512 39.9
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 7.6e-246 855.1 1518 38.2
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 4.6e-243 845.9 1479 38.6
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 5.7e-233 812.4 929 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 3.8e-221 773.1 1557 35.8
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 4.8e-216 756.1 999 46.4
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 7.5e-209 732.3 830 51.2
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 5.9e-206 722.6 525 71.6
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 2.3e-165 587.8 1815 30.2
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 9.0e-146 522.7 433 62.6
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 7.9e-142 509.6 849 41.0
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.2e-134 485.7 451 59.4
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 1.1e-132 479.2 630 47.9
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 4.8e-131 473.8 600 48.2
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.2e-118 432.6 436 56.4
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 8.2e-115 419.9 581 45.1
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 1.7e-104 385.6 1127 29.8
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 1.6e-78 299.3 225 68.4
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 9.2e-74 283.5 562 39.3
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 2.3e-72 278.9 389 45.2
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 9.8e-68 263.5 340 46.5
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 2.9e-67 261.9 278 53.6
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 6.6e-56 224.2 946 26.2
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 2.0e-52 212.6 233 51.9
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 7.8e-41 174.1 166 59.0
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.1e-23 117.1 94 62.8
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 7.4e-23 114.4 95 63.2
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 5.3e-21 108.2 113 54.0
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 2.5e-18 99.4 94 57.4
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 6.1e-17 94.7 81 54.3
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 6.1e-17 94.7 59 74.6
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.3e-16 93.6 68 60.3
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 3.0e-16 92.4 67 61.2
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 5.7e-15 88.2 103 47.6
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 6.3e-14 84.7 105 46.7
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 9.4e-10 70.9 52 67.3
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 6.7e-08 64.7 54 59.3
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.1e-07 63.9 66 53.0
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 1.7e-06 60.1 85 44.7


User provided reference genes

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