Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 8.2e-299 1029.6 523 100.0
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 5.8e-212 741.1 545 68.8
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 2.7e-209 732.3 546 70.3
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 1.3e-208 729.9 534 69.7
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 5.6e-207 724.5 535 71.0
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 5.6e-207 724.5 543 70.0
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 1.4e-205 719.9 539 69.6
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 1.8e-205 719.5 535 70.3
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 5.3e-205 718.0 535 70.1
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 9.0e-205 717.2 543 68.7
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 2.6e-204 715.7 543 69.2
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 5.8e-204 714.5 543 69.1
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 2.2e-203 712.6 543 69.1
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 8.4e-203 710.7 549 67.9
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 1.0e-200 703.7 534 68.0
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 6.7e-200 701.0 547 67.6
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 1.9e-199 699.5 535 68.0
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 2.5e-199 699.1 534 67.0
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 4.3e-199 698.4 547 67.6
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 5.6e-199 698.0 546 66.3
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 3.7e-198 695.3 535 68.6
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 4.2e-194 681.8 534 66.3
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 7.1e-194 681.0 535 66.9
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 3.9e-192 675.2 544 64.3
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 6.7e-192 674.5 638 58.3
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 2.5e-191 672.5 539 65.1
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 9.6e-191 670.6 537 65.9
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 1.4e-189 666.8 534 65.0
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 1.8e-189 666.4 545 62.2
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 3.1e-189 665.6 535 65.8
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 3.1e-189 665.6 540 63.9
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 1.2e-188 663.7 535 64.9
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 3.4e-188 662.1 545 63.9
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 1.3e-187 660.2 533 64.7
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 1.3e-187 660.2 535 64.9
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 1.3e-187 660.2 534 64.8
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 6.5e-187 657.9 545 63.7
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 6.5e-187 657.9 545 63.7
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 6.5e-187 657.9 545 63.7
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 6.5e-187 657.9 545 62.9
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 1.9e-186 656.4 537 63.9
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 3.2e-186 655.6 480 70.8
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 5.5e-186 654.8 545 62.4
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 5.5e-186 654.8 543 63.2
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 1.6e-185 653.3 534 64.0
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 1.6e-185 653.3 538 64.5
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 2.7e-185 652.5 537 63.9
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 6.0e-185 651.4 535 64.3
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 1.3e-184 650.2 558 62.4
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 3.9e-184 648.7 537 64.4
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 5.1e-184 648.3 526 64.3
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 8.7e-184 647.5 534 63.5
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 1.9e-183 646.4 568 60.7
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 4.3e-183 645.2 577 59.4
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 5.7e-183 644.8 535 62.2
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 7.4e-183 644.4 568 60.4
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 2.2e-182 642.9 535 62.1
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 4.8e-182 641.7 527 63.2
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 6.3e-182 641.3 526 63.9
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 8.2e-182 641.0 534 62.7
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 8.2e-182 641.0 568 60.0
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 3.1e-181 639.0 543 63.0
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 4.1e-181 638.6 552 62.0
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 1.2e-180 637.1 534 62.5
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 1.5e-180 636.7 575 59.8
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 2.6e-180 636.0 531 63.1
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 3.4e-180 635.6 588 59.9
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 7.6e-180 634.4 544 62.1
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 5.0e-179 631.7 535 61.1
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 3.2e-178 629.0 536 60.3
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 7.2e-178 627.9 535 63.2
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 1.2e-177 627.1 534 61.0
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 1.7e-174 616.7 534 61.8
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 4.8e-174 615.1 534 59.4
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 6.9e-173 611.3 533 58.7
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 4.5e-172 608.6 540 60.7
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 9.4e-170 600.9 515 61.9
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 1.1e-167 594.0 540 58.7
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 2.0e-159 566.6 555 57.1
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 7.0e-157 558.1 450 62.9
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 2.0e-151 540.0 537 53.4
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 5.5e-146 521.9 443 62.1
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 7.0e-141 505.0 553 53.3
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 1.6e-137 493.8 537 49.9
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 9.8e-135 484.6 536 48.5
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 1.6e-124 450.7 541 46.4
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.0e-123 448.0 545 46.2
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 1.4e-120 437.6 539 45.3
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 1.4e-112 411.0 326 63.8
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 1.6e-108 397.5 512 47.5
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 2.7e-108 396.7 506 42.7
Hma1.2p1_3491F.1_g336370 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 7.1e-85 318.9 213 70.9
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.8e-83 314.3 278 58.3
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 9.6e-82 308.5 291 56.4
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.8e-78 296.6 303 53.8
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.9e-77 294.3 222 64.9
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 2.5e-77 293.9 510 34.7
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 5.5e-77 292.7 541 34.2
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 3.5e-76 290.0 536 37.5
ClCG06G009470 Citrullus lanatus HOM05D000329 ORTHO05D005330 2.1e-68 264.2 200 64.0
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.0e-67 260.4 245 56.7
Haze_04430 Corylus avellana HOM05D000329 ORTHO05D005330 3.9e-67 260.0 176 71.6
QL93p0164_0019 Quercus lobata HOM05D000329 ORTHO05D005330 2.4e-64 250.8 175 68.6
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 2.7e-60 237.3 392 41.1
Haze_04431 Corylus avellana HOM05D000329 ORTHO05D005330 6.5e-54 216.1 197 60.9
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-53 214.9 180 62.8
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-53 214.9 180 62.8
Sed0005472 Sechium edule HOM05D000329 ORTHO05D005330 1.1e-50 205.3 173 59.0
Hma1.2p1_3491F.1_g336380 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 3.5e-47 193.7 202 52.0
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 1.5e-42 178.3 140 68.6
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 3.3e-42 177.2 195 52.3
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 6.3e-41 172.9 140 67.1
ClCG06G009480 Citrullus lanatus HOM05D000329 ORTHO05D005330 2.6e-39 167.5 197 54.3
AT4G38092 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 4.1e-32 143.7 107 68.2
Cpa.g.sc162.42 Carica papaya HOM05D000329 ORTHO05D028196 3.5e-31 140.6 86 83.7
COL.COLO4_15480 Corchorus olitorius HOM05D000329 ORTHO05D005330 8.5e-30 136.0 118 63.6
ClCG06G009450 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.5e-29 135.2 86 80.2
Rhsim05G0128300 Rhododendron simsii HOM05D000329 ORTHO05D005330 3.6e-28 130.6 154 51.9
Cre09.g404350 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D005330 6.8e-27 126.3 389 26.5
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 7.0e-24 116.3 88 70.5
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 3.5e-23 114.0 203 37.9
Haze_04429 Corylus avellana HOM05D000329 ORTHO05D005330 1.0e-22 112.5 69 81.2
SHI23197 Sapria himalayana HOM05D000329 ORTHO05D005330 6.1e-20 103.2 114 43.0
Sed0009230 Sechium edule HOM05D000329 ORTHO05D028196 2.3e-19 101.3 63 79.4
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 2.6e-18 97.8 208 33.2
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 2.6e-18 97.8 208 33.2
SEGI_11781 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 9.2e-16 89.4 90 50.0
SHI23198 Sapria himalayana HOM05D005377 ORTHO05D003034 4.5e-15 87.0 61 60.7
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 2.3e-14 84.7 372 22.6
Lsat_1_v5_gn_7_52080 Lactuca sativa HOM05D001785 ORTHO05D001150 2.0e-10 71.6 48 66.7
Lsat_1_v5_gn_7_52100 Lactuca sativa HOM05D000329 ORTHO05D005330 1.1e-08 65.9 86 43.0
SHI23202 Sapria himalayana HOM05D000329 ORTHO05D005330 1.4e-08 65.5 78 48.7
A06p19390 Brassica napus HOM05D000329 ORTHO05D028196 4.1e-08 63.9 71 52.1
BraA01t03057Z Brassica rapa HOM05D000329 ORTHO05D028196 4.1e-08 63.9 71 52.1
SHI23201 Sapria himalayana HOM05D000329 ORTHO05D005330 1.6e-07 62.0 47 63.8
SHI23199 Sapria himalayana HOM05D007305 ORTHO05D003975 6.0e-07 60.1 36 66.7
Cfa012903 Carpinus fangiana HOM05D000329 ORTHO05D005330 1.7e-06 58.5 42 71.4
AT3G05035 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 3.9e-06 57.4 39 69.2


User provided reference genes

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