Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 4.1e-69 264.6 136 100.0
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 6.6e-51 204.1 132 81.8
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 8.5e-14 80.9 107 44.9
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.9e-13 79.7 82 50.0
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 5.5e-13 78.2 107 43.9
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.6e-12 76.6 126 42.1
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 2.1e-12 76.3 88 48.9
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 2.1e-12 76.3 88 48.9
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 3.6e-12 75.5 98 43.9
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 4.7e-12 75.1 88 47.7
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 6.1e-12 74.7 104 41.3
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.4e-11 73.6 95 47.4
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.4e-11 73.6 108 39.8
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.4e-11 73.6 90 50.0
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.4e-11 73.6 103 41.7
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.8e-11 73.2 81 53.1
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.3e-11 72.8 122 41.8
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.3e-11 72.8 93 44.1
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.3e-11 72.8 106 46.2
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.3e-11 72.8 91 46.2
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 3.0e-11 72.4 90 44.4
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 3.9e-11 72.0 148 36.5
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.9e-11 72.0 125 41.6
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 3.9e-11 72.0 103 39.8
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 6.7e-11 71.2 82 52.4
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.7e-11 71.2 117 42.7
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.7e-11 71.2 117 42.7
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 6.7e-11 71.2 86 43.0
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 6.7e-11 71.2 86 43.0
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 6.7e-11 71.2 94 44.7
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 6.7e-11 71.2 102 45.1
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.1e-10 70.5 108 45.4
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 1.1e-10 70.5 94 43.6
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 1.1e-10 70.5 94 43.6
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.1e-10 70.5 85 43.5
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 1.5e-10 70.1 113 43.4
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-10 70.1 117 41.9
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 1.5e-10 70.1 122 40.2
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 2.0e-10 69.7 81 43.2
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 2.6e-10 69.3 96 46.9
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 3.3e-10 68.9 108 43.5
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 5.7e-10 68.2 96 40.6
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 5.7e-10 68.2 94 37.2
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 5.7e-10 68.2 130 35.4
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 7.4e-10 67.8 144 38.2
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 7.4e-10 67.8 88 43.2
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.3e-09 67.0 124 40.3
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.3e-09 67.0 81 50.6
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.7e-09 66.6 84 48.8
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.7e-09 66.6 84 48.8
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.7e-09 66.6 84 48.8
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.7e-09 66.6 84 48.8
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.2e-09 66.2 81 48.1
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.2e-09 66.2 125 36.0
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.8e-09 65.9 80 50.0
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 3.7e-09 65.5 87 49.4
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 3.7e-09 65.5 78 47.4
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 4.8e-09 65.1 145 36.6
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 6.3e-09 64.7 130 36.2
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 8.2e-09 64.3 125 37.6
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 8.2e-09 64.3 118 39.0
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.1e-08 63.9 139 34.5
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.4e-08 63.5 134 33.6
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.4e-08 63.5 70 51.4
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.4e-08 63.5 92 40.2
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.4e-08 63.5 83 43.4
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.8e-08 63.2 80 43.8
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.8e-08 63.2 134 33.6
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.8e-08 63.2 106 40.6
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 1.8e-08 63.2 88 43.2
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.4e-08 62.8 85 42.4
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 3.1e-08 62.4 145 35.9
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 4.1e-08 62.0 92 42.4
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 4.1e-08 62.0 81 49.4
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 4.1e-08 62.0 81 49.4
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 4.1e-08 62.0 81 49.4
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 5.3e-08 61.6 100 38.0
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 5.3e-08 61.6 91 41.8
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 5.3e-08 61.6 73 46.6
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.0e-08 61.2 118 38.1
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 7.0e-08 61.2 83 43.4
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 7.0e-08 61.2 106 33.0
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 9.1e-08 60.8 112 38.4
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 9.1e-08 60.8 79 44.3
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 9.1e-08 60.8 74 48.6
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.2e-07 60.5 131 38.2
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.2e-07 60.5 65 40.0
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 2.0e-07 59.7 109 37.6
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 2.0e-07 59.7 122 34.4
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 2.0e-07 59.7 139 34.5
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.0e-07 59.7 74 47.3
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 2.0e-07 59.7 74 47.3
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.0e-07 59.7 84 44.0
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 2.6e-07 59.3 86 44.2
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 2.6e-07 59.3 86 45.3
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.6e-07 59.3 53 56.6
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.6e-07 59.3 74 44.6
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.6e-07 59.3 74 44.6
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 2.6e-07 59.3 139 36.0
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 3.4e-07 58.9 143 35.7
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.4e-07 58.9 71 49.3
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 4.5e-07 58.5 86 43.0
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 4.5e-07 58.5 127 34.6
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 5.9e-07 58.2 69 46.4
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 5.9e-07 58.2 124 36.3
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 7.7e-07 57.8 70 44.3
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 7.7e-07 57.8 147 32.7
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 1.0e-06 57.4 69 42.0
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.0e-06 57.4 83 41.0
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.0e-06 57.4 78 43.6
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.3e-06 57.0 76 46.1
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 1.3e-06 57.0 76 46.1
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.3e-06 57.0 77 44.2
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 1.3e-06 57.0 87 47.1
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.3e-06 57.0 111 42.3
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.3e-06 57.0 77 42.9
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.2e-06 56.2 81 40.7
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 2.2e-06 56.2 91 33.0
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 2.2e-06 56.2 91 42.9
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 2.9e-06 55.8 69 40.6
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 2.9e-06 55.8 87 43.7
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 2.9e-06 55.8 70 44.3
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.8e-06 55.5 89 41.6
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 5.0e-06 55.1 82 37.8
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 8.5e-06 54.3 75 42.7


User provided reference genes

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