Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000908 Daucus carota HOM05D000058 ORTHO05D176188 1.2e-45 186.0 86 100.0
DCAR_023461 Daucus carota HOM05D000058 ORTHO05D000077 1.0e-12 76.6 36 91.7
PSO782G5320 Papaver somniferum HOM05D000058 ORTHO05D000077 2.5e-11 72.0 44 70.5
Os02g0634700 Oryza sativa ssp. japonica HOM05D000058 ORTHO05D000077 5.5e-11 70.9 44 68.2
DCAR_026895 Daucus carota HOM05D000058 ORTHO05D000077 9.5e-11 70.1 35 82.9
Actinidia04319 Actinidia chinensis HOM05D000058 ORTHO05D000077 4.7e-10 67.8 35 80.0
PSO063G1261 Papaver somniferum HOM05D000058 ORTHO05D000077 4.7e-10 67.8 44 65.9
Rhsim09G0071300 Rhododendron simsii HOM05D000058 ORTHO05D000077 4.7e-10 67.8 35 80.0
RhsimUnG0112600 Rhododendron simsii HOM05D000058 ORTHO05D000077 4.7e-10 67.8 35 80.0
Ciclev10031313m.g Citrus clementina HOM05D000058 ORTHO05D000077 8.0e-10 67.0 35 80.0
Cc11_g02570 Coffea canephora HOM05D000058 ORTHO05D000077 8.0e-10 67.0 35 80.0
Nn4g24962 Nelumbo nucifera HOM05D000058 ORTHO05D000077 1.0e-09 66.6 35 80.0
Zm00001eb413660 Zea mays HOM05D000058 ORTHO05D000077 1.0e-09 66.6 62 51.6
ATR0618G004 Amborella trichopoda HOM05D000058 ORTHO05D000077 1.8e-09 65.9 44 61.4
CAN.G39.6 Capsicum annuum HOM05D000058 ORTHO05D000077 1.8e-09 65.9 35 80.0
Peaxi162Scf00334g00323 Petunia axillaris HOM05D000058 ORTHO05D000077 1.8e-09 65.9 35 80.0
vmacro16039 Vaccinium macrocarpon HOM05D000058 ORTHO05D000077 1.8e-09 65.9 35 77.1
Zm00001eb185470 Zea mays HOM05D000058 ORTHO05D000077 1.8e-09 65.9 44 63.6
Zm00001eb248170 Zea mays HOM05D000058 ORTHO05D000077 1.8e-09 65.9 44 63.6
Dinv11723 Davidia involucrata HOM05D000058 ORTHO05D000077 2.3e-09 65.5 35 77.1
Nitab4.5_0002132g0080 Nicotiana tabacum HOM05D000058 ORTHO05D000077 2.3e-09 65.5 35 80.0
Solyc02g014830.4 Solanum lycopersicum HOM05D000058 ORTHO05D000077 2.3e-09 65.5 35 80.0
Sopen02g004300 Solanum pennellii HOM05D000058 ORTHO05D000077 2.3e-09 65.5 35 80.0
Atru.chr11.1147 Acer truncatum HOM05D000058 ORTHO05D000077 3.0e-09 65.1 35 77.1
MBI03_g13816_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D000077 4.0e-09 64.7 36 72.2
HPP92_007309 Vanilla planifolia HOM05D000058 ORTHO05D000077 4.0e-09 64.7 36 77.8
PGSC0003DMG400013054 Solanum tuberosum HOM05D000058 ORTHO05D000077 1.2e-08 63.2 35 77.1
SalBow2G2069 Salvia bowleyana HOM05D000058 ORTHO05D000077 2.6e-08 62.0 35 74.3
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 1.3e-07 59.7 44 61.4
TAR371G0940 Trochodendron aralioides HOM05D000058 ORTHO05D000077 1.3e-07 59.7 35 68.6
AUR62017705 Chenopodium quinoa HOM05D000058 ORTHO05D000077 1.7e-07 59.3 36 75.0
AUR62032975 Chenopodium quinoa HOM05D000058 ORTHO05D000077 1.7e-07 59.3 36 75.0
EL10Ac9g22956 Beta vulgaris HOM05D000058 ORTHO05D000077 2.2e-07 58.9 36 72.2
Sed0008046 Sechium edule HOM05D000058 ORTHO05D000077 2.2e-07 58.9 36 72.2
Eucgr.J00874 Eucalyptus grandis HOM05D000058 ORTHO05D000077 2.8e-07 58.5 35 65.7
AUR62017704 Chenopodium quinoa HOM05D000058 ORTHO05D000077 3.7e-07 58.2 44 61.4
AUR62032976 Chenopodium quinoa HOM05D000058 ORTHO05D000077 3.7e-07 58.2 44 61.4
Migut.C00232 Erythranthe guttata HOM05D000058 ORTHO05D000077 3.7e-07 58.2 36 72.2
SGA_v2.0_scaffold362G49919 Striga asiatica HOM05D000058 ORTHO05D000077 3.7e-07 58.2 44 59.1
SGA_v2.0_scaffold362G49920 Striga asiatica HOM05D000058 ORTHO05D000077 3.7e-07 58.2 44 59.1
SGA_v2.0_scaffold808G53626 Striga asiatica HOM05D000058 ORTHO05D000077 3.7e-07 58.2 44 59.1
THA.LOC104818373 Tarenaya hassleriana HOM05D000058 ORTHO05D000077 3.7e-07 58.2 35 68.6
Ah.01g012410 Amaranthus hybridus HOM05D000058 ORTHO05D000077 4.9e-07 57.8 36 69.4
ECA233G2635 Erigeron canadensis HOM05D000058 ORTHO05D000077 6.3e-07 57.4 35 68.6
FAN17G0267 Fragaria x ananassa HOM05D000058 ORTHO05D000077 6.3e-07 57.4 43 58.1
HanXRQChr13g0387611 Helianthus annuus HOM05D000058 ORTHO05D000077 6.3e-07 57.4 35 68.6
Sc10g0005120 Simmondsia chinensis HOM05D000058 ORTHO05D000077 6.3e-07 57.4 36 69.4
Gohir.D04G148400 Gossypium hirsutum HOM05D000058 ORTHO05D000077 8.3e-07 57.0 35 68.6
Gorai.012G134700 Gossypium raimondii HOM05D000058 ORTHO05D000077 8.3e-07 57.0 35 68.6
CsaV3_7G030650 Cucumis sativus L. HOM05D000058 ORTHO05D000077 1.1e-06 56.6 36 69.4
Lj6A712T58 Lonicera japonica HOM05D000058 ORTHO05D000077 1.4e-06 56.2 35 65.7
Lj6C717T26 Lonicera japonica HOM05D000058 ORTHO05D000077 1.4e-06 56.2 35 65.7
COL.COLO4_08593 Corchorus olitorius HOM05D000058 ORTHO05D000077 1.8e-06 55.8 43 55.8
Duzib248G1519 Durio zibethinus HOM05D000058 ORTHO05D000077 1.8e-06 55.8 65 43.1
Atru.chr11.1161 Acer truncatum HOM05D000058 ORTHO05D000077 2.4e-06 55.5 63 44.4
ClCG09G004490 Citrullus lanatus HOM05D000058 ORTHO05D000077 2.4e-06 55.5 36 66.7
MELO3C023591.2 Cucumis melo HOM05D000058 ORTHO05D000077 2.4e-06 55.5 36 66.7
Migut.L00862 Erythranthe guttata HOM05D000058 ORTHO05D000077 2.4e-06 55.5 36 66.7
PGR142G0794 Punica granatum HOM05D000058 ORTHO05D000077 2.4e-06 55.5 35 65.7
SEGI_23851 Sequoiadendron giganteum HOM05D000058 ORTHO05D000077 2.4e-06 55.5 44 50.0
Sc19g0002560 Simmondsia chinensis HOM05D000058 ORTHO05D000077 2.4e-06 55.5 35 68.6
TAR674G0002 Trochodendron aralioides HOM05D000058 ORTHO05D000077 2.4e-06 55.5 44 47.7
Potri.005G091700 Populus trichocarpa HOM05D000058 ORTHO05D000077 3.1e-06 55.1 34 67.6
A03p03700 Brassica napus HOM05D000058 ORTHO05D000077 4.1e-06 54.7 64 43.8
BraA03t09718Z Brassica rapa HOM05D000058 ORTHO05D000077 4.1e-06 54.7 64 43.8
Gohir.A04G108901 Gossypium hirsutum HOM05D000058 ORTHO05D000077 4.1e-06 54.7 35 65.7
Duzib132G0036 Durio zibethinus HOM05D000058 ORTHO05D000077 5.4e-06 54.3 55 49.1
FvH4_4g37000 Fragaria vesca HOM05D000058 ORTHO05D000077 5.4e-06 54.3 43 55.8
FAN12G3667 Fragaria x ananassa HOM05D000058 ORTHO05D000077 5.4e-06 54.3 43 55.8
Manes.11G103100 Manihot esculenta HOM05D000058 ORTHO05D000077 7.0e-06 53.9 34 64.7
unitig_26.g10597 Utricularia gibba HOM05D000058 ORTHO05D000077 7.0e-06 53.9 35 65.7
BcaB01g05619 Brassica carinata HOM05D000058 ORTHO05D000077 9.2e-06 53.5 63 42.9
CANSAT78G2253 Cannabis sativa HOM05D000058 ORTHO05D000077 9.2e-06 53.5 43 53.5
SEGI_18451 Sequoiadendron giganteum HOM05D000058 ORTHO05D000077 9.2e-06 53.5 44 50.0
TWI38G0330 Tripterygium wilfordii HOM05D000058 ORTHO05D000077 9.2e-06 53.5 36 66.7
TWI38G1732 Tripterygium wilfordii HOM05D000058 ORTHO05D000077 9.2e-06 53.5 36 66.7


User provided reference genes

Program Settings