Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000751 Daucus carota HOM05D002558 ORTHO05D002768 1.3e-12 76.3 82 100.0
Migut.A00207 Erythranthe guttata HOM05D002558 ORTHO05D002768 5.8e-10 67.4 85 48.2
Lj7C702T4 Lonicera japonica HOM05D002558 ORTHO05D002768 1.0e-09 66.6 85 64.7
Ciclev10009557m.g Citrus clementina HOM05D002558 ORTHO05D002768 3.8e-09 64.7 82 46.3
GSVIVG01035629001 Vitis vinifera HOM05D002558 ORTHO05D002768 3.8e-09 64.7 34 85.3
Peaxi162Scf01204g00123 Petunia axillaris HOM05D002558 ORTHO05D002768 5.0e-09 64.3 34 88.2
Cc08_g09510 Coffea canephora HOM05D002558 ORTHO05D002768 6.5e-09 63.9 82 89.0
Dinv27898 Davidia involucrata HOM05D002558 ORTHO05D002768 6.5e-09 63.9 82 90.2
SGA_v2.0_scaffold103G29960 Striga asiatica HOM05D002558 ORTHO05D002768 6.5e-09 63.9 34 88.2
MSTRG.25908 Avicennia marina HOM05D002558 ORTHO05D002768 8.4e-09 63.5 34 88.2
CiPaw.08G025400 Carya illinoinensis HOM05D002558 ORTHO05D002768 8.4e-09 63.5 82 80.5
vmacro05369 Vaccinium macrocarpon HOM05D002558 ORTHO05D002768 8.4e-09 63.5 83 56.6
TWI63G0866 Tripterygium wilfordii HOM05D002558 ORTHO05D002768 1.1e-08 63.2 34 88.2
Lj8A586T41 Lonicera japonica HOM05D002558 ORTHO05D002768 1.9e-08 62.4 34 85.3
Nitab4.5_0001567g0160 Nicotiana tabacum HOM05D002558 ORTHO05D002768 1.9e-08 62.4 34 82.4
Solyc11g071220.2 Solanum lycopersicum HOM05D002558 ORTHO05D002768 1.9e-08 62.4 34 82.4
Sopen11g028900 Solanum pennellii HOM05D002558 ORTHO05D002768 1.9e-08 62.4 34 82.4
PGSC0003DMG400018583 Solanum tuberosum HOM05D002558 ORTHO05D002768 1.9e-08 62.4 34 82.4
ECA246G0608 Erigeron canadensis HOM05D005233 ORTHO05D006308 2.5e-08 62.0 34 79.4
arahy.Tifrunner.gnm1.ann1.9C8SD4 Arachis hypogaea HOM05D002558 ORTHO05D002768 3.2e-08 61.6 82 59.8
arahy.Tifrunner.gnm1.ann1.KPU76V Arachis hypogaea HOM05D002558 ORTHO05D002768 3.2e-08 61.6 82 58.5
Ca_15596_v3 Cicer arietinum L. HOM05D002558 ORTHO05D002768 3.2e-08 61.6 82 74.4
Dinv14262 Davidia involucrata HOM05D000078 ORTHO05D002768 3.2e-08 61.6 34 88.2
MD15G1093900 Malus domestica HOM05D002558 ORTHO05D002768 3.2e-08 61.6 33 87.9
CSS0007775 Camellia sinensis var. sinensis HOM05D002558 ORTHO05D002768 4.2e-08 61.2 34 85.3
THA.LOC104799194 Tarenaya hassleriana HOM05D002558 ORTHO05D002768 4.2e-08 61.2 34 79.4
Ah.10g035040 Amaranthus hybridus HOM05D002558 ORTHO05D002768 5.5e-08 60.8 34 79.4
CAN.G309.76 Capsicum annuum HOM05D002558 ORTHO05D002768 5.5e-08 60.8 34 79.4
TWI34G1326 Tripterygium wilfordii HOM05D002558 ORTHO05D002768 5.5e-08 60.8 34 85.3
CAN.G309.70 Capsicum annuum HOM05D000001 ORTHO05D011234 9.3e-08 60.1 34 79.4
Prupe.1G448700 Prunus persica HOM05D002558 ORTHO05D002768 9.3e-08 60.1 33 84.8
Actinidia14672 Actinidia chinensis HOM05D002558 ORTHO05D002768 1.2e-07 59.7 34 79.4
Cfa013362 Carpinus fangiana HOM05D002558 ORTHO05D002768 1.2e-07 59.7 33 84.8
Glyma.04G083900 Glycine max HOM05D002558 ORTHO05D002768 1.2e-07 59.7 80 50.0
Gohir.A06G093000 Gossypium hirsutum HOM05D002558 ORTHO05D002768 1.2e-07 59.7 33 84.8
MBI04_g27061_MAGBIO Magnolia biondii HOM05D002558 ORTHO05D002768 1.2e-07 59.7 33 81.8
Medtr3g110202 Medicago truncatula HOM05D002558 ORTHO05D002768 1.2e-07 59.7 33 87.9
Oeu031547.2 Olea europaea HOM05D002558 ORTHO05D002768 1.2e-07 59.7 33 81.8
Sc09g0009270 Simmondsia chinensis HOM05D002558 ORTHO05D002768 1.2e-07 59.7 34 82.4
unitig_0.g2573 Utricularia gibba HOM05D002558 ORTHO05D002768 1.2e-07 59.7 34 79.4
AUR62009287 Chenopodium quinoa HOM05D002558 ORTHO05D002768 1.6e-07 59.3 33 81.8
AUR62039693 Chenopodium quinoa HOM05D002558 ORTHO05D002768 1.6e-07 59.3 33 81.8
Nn3g18172 Nelumbo nucifera HOM05D002558 ORTHO05D002768 1.6e-07 59.3 33 81.8
SalBow4G2117 Salvia bowleyana HOM05D002558 ORTHO05D002768 1.6e-07 59.3 34 79.4
Glyma.14G146200 Glycine max HOM05D002558 ORTHO05D002768 2.1e-07 58.9 33 81.8
Glyma.17G194200 Glycine max HOM05D002558 ORTHO05D002768 2.1e-07 58.9 82 47.6
Lsat_1_v5_gn_5_33620 Lactuca sativa HOM05D002558 ORTHO05D002768 2.1e-07 58.9 33 75.8
Nn2g11627 Nelumbo nucifera HOM05D002558 ORTHO05D002768 2.1e-07 58.9 33 78.8
Eucgr.C02926 Eucalyptus grandis HOM05D002558 ORTHO05D002768 2.7e-07 58.5 33 78.8
Glyma.06G085600 Glycine max HOM05D002558 ORTHO05D002768 2.7e-07 58.5 32 84.4
Gohir.D06G092700 Gossypium hirsutum HOM05D002558 ORTHO05D002768 2.7e-07 58.5 33 84.8
Gorai.010G107100 Gossypium raimondii HOM05D002558 ORTHO05D002768 2.7e-07 58.5 33 84.8
HanXRQChr08g0234401 Helianthus annuus HOM05D002558 ORTHO05D002768 2.7e-07 58.5 34 70.6
Phvul.009G109500 Phaseolus vulgaris HOM05D002558 ORTHO05D002768 2.7e-07 58.5 32 84.4
TPR.G1349 Trifolium pratense HOM05D002558 ORTHO05D002768 2.7e-07 58.5 33 81.8
Atru.chr7.2093 Acer truncatum HOM05D002558 ORTHO05D002768 3.5e-07 58.2 84 60.7
Atru.chr7.2107 Acer truncatum HOM05D002558 ORTHO05D002768 3.5e-07 58.2 84 60.7
Carub.0006s1008 Capsella rubella HOM05D002558 ORTHO05D002768 3.5e-07 58.2 81 58.0
Duzib168G1844 Durio zibethinus HOM05D002558 ORTHO05D002768 3.5e-07 58.2 33 84.8
Hund19519 Selenicereus undatus HOM05D002558 ORTHO05D002768 3.5e-07 58.2 34 79.4
Actinidia15737 Actinidia chinensis HOM05D002558 ORTHO05D002768 4.6e-07 57.8 34 76.5
CDE08G0456 Ceratophyllum demersum HOM05D002558 ORTHO05D002768 4.6e-07 57.8 33 84.8
MD08G1114400 Malus domestica HOM05D002558 ORTHO05D002768 4.6e-07 57.8 33 81.8
COL.COLO4_20966 Corchorus olitorius HOM05D000191 ORTHO05D000122 6.1e-07 57.4 33 75.8
FvH4_2g35630 Fragaria vesca HOM05D002558 ORTHO05D002768 6.1e-07 57.4 34 76.5
FAN15G3002 Fragaria x ananassa HOM05D002558 ORTHO05D002768 6.1e-07 57.4 34 76.5
FAN20G1950 Fragaria x ananassa HOM05D002558 ORTHO05D002768 6.1e-07 57.4 34 76.5
FAN27G0094 Fragaria x ananassa HOM05D002558 ORTHO05D002768 6.1e-07 57.4 34 76.5
Gohir.A08G249984 Gossypium hirsutum HOM05D002558 ORTHO05D002768 6.1e-07 57.4 32 81.2
Gohir.D08G271500 Gossypium hirsutum HOM05D002558 ORTHO05D002768 6.1e-07 57.4 32 81.2
Gorai.004G289900 Gossypium raimondii HOM05D002558 ORTHO05D002768 6.1e-07 57.4 32 81.2
PGR044G0927 Punica granatum HOM05D002558 ORTHO05D002768 6.1e-07 57.4 33 84.8
CARHR201620 Cardamine hirsuta HOM05D002558 ORTHO05D002768 7.9e-07 57.0 32 78.1
Thecc.09G044700 Theobroma cacao HOM05D002558 ORTHO05D002768 7.9e-07 57.0 33 81.8
TAR626G0604 Trochodendron aralioides HOM05D002558 ORTHO05D002768 7.9e-07 57.0 33 75.8
Aqoxy7G01488 Aquilegia oxysepala HOM05D002558 ORTHO05D002768 1.0e-06 56.6 33 72.7
Potri.006G238800 Populus trichocarpa HOM05D002558 ORTHO05D002768 1.0e-06 56.6 33 81.8
Sabra06G0186800 Salix brachista HOM05D002558 ORTHO05D002768 1.0e-06 56.6 33 81.8
AL6G22300 Arabidopsis lyrata HOM05D000191 ORTHO05D002768 1.3e-06 56.2 32 78.1
Potri.018G043800 Populus trichocarpa HOM05D002558 ORTHO05D002768 1.3e-06 56.2 33 81.8
QL12p041571 Quercus lobata HOM05D002558 ORTHO05D002768 1.3e-06 56.2 33 81.8
RcHm_v2.0_Chr6g0306181 Rosa chinensis HOM05D002558 ORTHO05D002768 1.3e-06 56.2 34 73.5
VMungo1309G0315 Vigna mungo HOM05D000191 ORTHO05D000122 1.3e-06 56.2 80 46.2
AT5G11600 Arabidopsis thaliana HOM05D002558 ORTHO05D002768 1.8e-06 55.8 33 75.8
Ca_12750_v3 Cicer arietinum L. HOM05D002558 ORTHO05D002768 1.8e-06 55.8 32 75.0
Duzib150G0654 Durio zibethinus HOM05D002558 ORTHO05D002768 1.8e-06 55.8 33 81.8
Lalb_Chr08g0243091 Lupinus albus HOM05D002558 ORTHO05D002768 1.8e-06 55.8 33 75.8
MBI01_g24461_MAGBIO Magnolia biondii HOM05D002558 ORTHO05D002768 1.8e-06 55.8 33 72.7
Oeu012198.1 Olea europaea HOM05D002558 ORTHO05D002768 1.8e-06 55.8 83 43.4
Os05g0596200 Oryza sativa ssp. japonica HOM05D002558 ORTHO05D002768 2.3e-06 55.5 32 78.1
TPR.G24532 Trifolium pratense HOM05D002558 ORTHO05D002768 2.3e-06 55.5 32 75.0
MELO3C011144.2 Cucumis melo HOM05D002558 ORTHO05D002768 3.0e-06 55.1 33 78.8
CsaV3_2G030890 Cucumis sativus L. HOM05D002558 ORTHO05D002768 3.0e-06 55.1 33 78.8
Zm00001eb345570 Zea mays HOM05D002558 ORTHO05D002768 3.0e-06 55.1 33 69.7
ClCG08G012260 Citrullus lanatus HOM05D002558 ORTHO05D002768 3.9e-06 54.7 33 75.8
HPP92_024168 Vanilla planifolia HOM05D002558 ORTHO05D002768 3.9e-06 54.7 33 75.8
CiPaw.07G204600 Carya illinoinensis HOM05D002558 ORTHO05D002768 5.1e-06 54.3 33 75.8
Lalb_Chr23g0269601 Lupinus albus HOM05D002558 ORTHO05D002768 5.1e-06 54.3 32 81.2
Sabra18G0043900 Salix brachista HOM05D002558 ORTHO05D002768 6.7e-06 53.9 33 75.8
CDE02G1533 Ceratophyllum demersum HOM05D000191 ORTHO05D000122 8.7e-06 53.5 33 81.8
Phvul.002G267100 Phaseolus vulgaris HOM05D002558 ORTHO05D002768 8.7e-06 53.5 82 41.5
Psat5g021640 Pisum sativum HOM05D002558 ORTHO05D002768 8.7e-06 53.5 33 78.8
Sp6g32015 Schrenkiella parvula HOM05D002558 ORTHO05D002768 8.7e-06 53.5 32 75.0


User provided reference genes

Program Settings